Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00687 ATGTCTGGATTTTCATCAACTTCTACTGCTGAGGAAGTTACTCAAGGGATCCATGGAACTGGTCTCACTGCAATTGTCACAGGGACAACCCATGGTATTGGCACCGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTGCATGTGATTATGGCCGTGAGAAATACAATTGCTGCAAAAACTGTCCAAGAAACCATACTTGAAGAGATTCCCACTGCTAAAGTTGATTTCATGGAATTAGATCTTAGCTCAATGGCATCTGTTAGGAAATTTGCATCTGAGTTTCAATCATCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATATTGGCAACCCCTTTCACGCTGTCTAAAGACAACATAGAACTACAATTTGCTACGAATTATTTAGGTCATTTTCTTTTGACAAATCTTTTATTGGATATTATGAAGAAATCGGCAAGTGCAAGCAAGCAAGAAGGAAGAATTATTAATGTTACCTCAGGTGGTCACCGGTATACATATTCAGAAGGAATCATTTTTGATAAAATTAACGATGAATCAAGTTATGAGAACTGGCGTGCATACGGACAATCGAAGCTAGCTAACATTTTACATGCAAACGAACTAGCAATGCGTTTAAAGGAAGATGGAGTAAATATTACTGCAAATTCTCTTCATCCAGGAGCTATTATTACCAATATTTATAAACCAGAGATTAGTGGCAGTGTGCCAACGGAATTAATGAACAAGTTTGGGAAAATGGTGATGAAAAATATCCAGCAGGGAGCAGCAACAACATGCTATGTGGCATTGCACCCTCAAGTAAAGGGAATTAGTGGCGAGTACTTTTCAGACAGTAATGTGGATACAGCAAGCTCACTCCCAACAGACCCTCTTTTGGCTAAGAAACTTTGGGATTTCAGTTTGAAATTAATTGATTACAATAGTCATTAG 939 0.3866 MSGFSSTSTAEEVTQGIHGTGLTAIVTGTTHGIGTETARVLALRGVHVIMAVRNTIAAKTVQETILEEIPTAKVDFMELDLSSMASVRKFASEFQSSGLPLNILINNAGILATPFTLSKDNIELQFATNYLGHFLLTNLLLDIMKKSASASKQEGRIINVTSGGHRYTYSEGIIFDKINDESSYENWRAYGQSKLANILHANELAMRLKEDGVNITANSLHPGAIITNIYKPEISGSVPTELMNKFGKMVMKNIQQGAATTCYVALHPQVKGISGEYFSDSNVDTASSLPTDPLLAKKLWDFSLKLIDYNSH 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00687 312 CDD retinol-DH_like_SDR_c_like 21 300 - -
Cca08g00687 312 Gene3D - 18 310 - -
Cca08g00687 312 Pfam short chain dehydrogenase 23 169 IPR002347 -
Cca08g00687 312 PANTHER RETINOL DEHYDROGENASE 2 308 - -
Cca08g00687 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 283 IPR036291 -
Cca08g00687 312 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 308 - -
Cca08g00687 312 PRINTS Glucose/ribitol dehydrogenase family signature 23 40 IPR002347 -
Cca08g00687 312 PRINTS Glucose/ribitol dehydrogenase family signature 213 230 IPR002347 -
Cca08g00687 312 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Cca08g00687 312 PRINTS Glucose/ribitol dehydrogenase family signature 190 209 IPR002347 -
Cca08g00687 312 PRINTS Glucose/ribitol dehydrogenase family signature 99 110 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00687 Cca-Chr8 12705346 12713841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00687 25 296 Acyl Lipid Metabolism Gene Families AT1G62610 27.027 1.76e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00687 - - cam:101490020 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00687 08 12705346 12713841 Cca02g02234 02 42867200 42873916 PCT