Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02234 ATGTGGCCATTCAGCAAGAAAGGGGCTTCTGGGTTTTCATCATCATCCACTGCACAACAAGTTACTGAAGGCATTGATGGAACTTCTCTCACTGCTATTGTCACAGGAGCATCCAGTGGTATTGGCACTGAGACTACACGTGTACTTGCTTTGCGCGGTGTCCATGTCATTATGGGTGTGAGAAATATGATTGCTGCTAAAGATGTCAAAGAAACAATACTTAAAGAGATTCCCTCTGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCAATGGAGTCTGTCAAGAAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATTATGGCATGCCCTTTCAAGCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACTTGGGGCATTTTCTCTTGACAAATCTTTTGTTGGACACTATGAAGAAAACTTCACGTGAGACTAAAAAAGAAGGAAGAATTGTTAATGTCTCCTCTGAGGCTCACCGATTTGCATATCCTGAAGGAATCCGTTTTAACAAAATTAATGATGAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGGAAGATGGGGCGGATATTACTGCAAATTCTCTTCATCCGGGAACAGTTACCACCAATCTTTTCCGTTACAACAGTACAGTGAATGGGCTAATTGCTGCGATTGGGAGGCTTTTTCTTAAAAATGTCCAGCAGGGAGCCGCAACAACATGCTATGTAGCTTTGCACCCACAAGTGAAGGGAATTAGTGGCAAGTATTTTTCAGACAGTAATTTGGCCAAAACAACCTCACAGGGCACTGATGCTGATTTGGCCAAGAAATTATGGGACTTCAGCACGGATTTGACCAAGTAA 942 0.4161 MWPFSKKGASGFSSSSTAQQVTEGIDGTSLTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMIAAKDVKETILKEIPSAKVDAMELDLSSMESVKKFASEFKSSGLPLNILINNAGIMACPFKLSKDKIELQFATNHLGHFLLTNLLLDTMKKTSRETKKEGRIVNVSSEAHRFAYPEGIRFNKINDESSYNNWRAYGQSKLANILHANELTRRLKEDGADITANSLHPGTVTTNLFRYNSTVNGLIAAIGRLFLKNVQQGAATTCYVALHPQVKGISGKYFSDSNLAKTTSQGTDADLAKKLWDFSTDLTK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02234 313 CDD retinol-DH_like_SDR_c_like 31 305 - -
Cca02g02234 313 Pfam short chain dehydrogenase 31 179 IPR002347 -
Cca02g02234 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Cca02g02234 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cca02g02234 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cca02g02234 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cca02g02234 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Cca02g02234 313 Gene3D - 25 313 - -
Cca02g02234 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Cca02g02234 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 289 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02234 Cca-Chr2 42867200 42873916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02234 31 239 Acyl Lipid Metabolism Gene Families AT1G62610 29.204 1.50e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02234 - - gmx:100796920 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02234 02 42867200 42873916 Cca02g02234 02 42867200 42873916 ECH
Cca08g00687 08 12705346 12713841 Cca02g02234 02 42867200 42873916 PCT