Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00662 ATGGCCTTTAACATTAGCTTCAGATGTTTGGCAATTGTTTTCCTTGCAGTTTTGGCCACCGTGCAAGGAACTCTTGGGGAGATAGAGTGTGAGTATTTGAGCCACGACACGTGCGCATTTGCGGTGTCATACGAAGGAAAACGGTGCGTGCTTGAGAAGCGTGTGAAGAGGACAGGGGAAGAAGCATACACGTGCAAGACTTCAGAGATTGAAGCTGAAAAACAAAAGAACCATATTGAGAGTGATGAATGTATTAAGGCTTGTGGTTTGGACAGAAAATCCTTTGGAATCTCATCAGATTCTCTTTTGGAAACTCGTTTCACACAAAATCTGTGTTCCCCTCAATGCTACCAAAGCTGCCCCAACATTGTTGATCTTTACTTCAACCTTGCAGCTGGTGAAGGTGTGTTTCTTCCAAAACTGTGTGAAGCACAAGGTGCAAATGCTCGTAGACAAATGAGTGAGATGAAAAGTTCTGGTATTGTGGCACCAGGACCCGTGCACTCTCTTCACTTCACAGCAATTCCTCCACAATCTTTTGATGCTGCTGAGTTCGCAGCTGAACCTGCACTCACCCCAGGACTCCCCTAA 591 0.4552 MAFNISFRCLAIVFLAVLATVQGTLGEIECEYLSHDTCAFAVSYEGKRCVLEKRVKRTGEEAYTCKTSEIEAEKQKNHIESDECIKACGLDRKSFGISSDSLLETRFTQNLCSPQCYQSCPNIVDLYFNLAAGEGVFLPKLCEAQGANARRQMSEMKSSGIVAPGPVHSLHFTAIPPQSFDAAEFAAEPALTPGLP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00662 196 PANTHER PAR1 PROTEIN 1 193 - -
Cca08g00662 196 PANTHER PAR1 PROTEIN 1 193 IPR009489 -
Cca08g00662 196 Pfam PAR1 protein 28 182 IPR009489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00662 Cca-Chr8 12228745 12230369 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00662 - - gmx:100778782 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00662 08 12228745 12230369 Cca08g00662 08 12228745 12230369 ECH
Cca08g00662 08 12228745 12230369 Cca02g02252 02 43096440 43097532 PCT