Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00642 ATGTTCAAGTCACGGAGCAAGAAGAACAAGATTAAAGCTGTATTCAAACTGCAGTTTCAGGCAACTCAGGTGCCAAAGATGAAAAAGTCTACAGTGATGATAGCTTTGGTGCCAGATGATGTTGGGAAGCCAAAGGTGAAACTAGAGAAAGTTTCTGTTCAGGATGGAACCTGTCTATGGGAAAAACCAATTTTTGAATCAGTTAAACTCGTCAGGGACACAAAATCAGGAAAACTTCAAGAGAAAATCTACCATTTTGTTGTTTCAACTGGATCTTCAAAATCTGGATTTCTTGGGGAATCCTCAATTGACTTAGCTGATTTTGCTGCAGAAACTGAGCCACTTACTGTGTCCCTACCCCTAAAGTTTGCCAATTCAGGTGCAATCCTACATGTGACAATTCAGAATGTGGAAGGGGTACATATAGATCAAAGAAATGAGGAAGATAATGGAAATGGAAGCTTAAGACACCAACTGAGCATTTGCAGTGCAGATGAAGGTTCTCATAATGTTCACGATTTTCCCAAGCTACTACCCACCTTGAGGCAGAATTCAATGCCTTCAGGAACTATCGAGGCCATTGCAACAAAAGTTCATATGCATTGGGGGTCCATGGGTTCAGCTTCAGATAGGAGTTTAGGTAATTACTGGACAAACAGCCTGGAAGATACTCTTCCTCGAGAAAGATTACAAGAGCCTTCGGATAATGTCACTGAAAACCTCAAAAGTGAAATTGCTTCTCTAAAGAGGAAAGTTGAAGCATCAGAACTAGAGTTACAATCACTTCAGAAGCTGATGGAGAAGGAATGCAGTCGAGGACAAAGTATGTCAAGACAAATAATCAGCCTTAGAGAGGAGAGAAATATGATCAAAACTAAATATGAGCAACTCCTGTCCCAGCAAAACGTCAATGATAAGACCAAAACTTCAAAAGCCTTACAAAATGAGATTGAAGATGCTAGACTGAAGTTAGAAGCAATAAAGGAAGAGCTTGTTCATGAAAAAGAGTTTAGTTCTAATATTCAATTGCAACTCCAGAAGACACAAAACTCAAACTCCGAACTGCTTTTGGCAGTGAGAGAACTTGAAGCAATGCTGGAGCAAAAGAATAAGGAATTGTTGGACAATAAAGAGCATGATGCCACAGAATTAGGTACTTTGAAGCAGAAAATTGCAGACCAGAATGGTCAATTAGATATTTATTATAAGCAACGAGAAGAGCTAAATGATCATATAAAAGAGCTCAACTTTGAGTGTGAGCTTCTGAAAAAAGAAAATCTGAATATGTCTTTGAGATTAAAACATGGAGAAGCACAACATATTGTCTTACAAAATAAACATTCAGCTTCTTTGGCAACTATAGAACAACTTGAATCAGAAGTACAGAGATTAGAAGAAAAGATAAAGAAGCAGGCATATGATTTTTCAGACTCTTTGCTTTACATCAATGAACTTGAAAATCGAGTTGGTGATTTGGAAAAGCAAGCAGAAAAAATTGAAGAAGATTTCCATGCCATGAAATGCGCAAAACTTGAGCAGGAAGCACGGGCCATTCAGGCAGAGGAGACATTGATAAAGACAAGACACGATAATGGTCTCACATGTCAGCATTTTCAGGATGAATATAGGAGTCTTTCAGTTGAAATGACATTAAAAGTAGAAGAAAACGAAAAGAAGACCATGGAAGCTTATGCAGAAGCTGATGAATTGCGGAAGCAGAAGAAACATACGGAAGAAATGCTCCAGAAATGCAATCAAGAGCTTGGGCTCATTACAAATCAGAATGAACTGAAACTGCAACAACTCTTGAACCAAATAGATTCAAAAGAAAAGACAATAGAAATGATGTCAGAAAAACTAGAGGCCAAGTCCAAACAACTTGAAGATGTACAATGGCACATGGTAGAAAAGGACGAGGCACTAGCAAAGCAAATTCAATTTCTCAGAATTGAAATTAGAAAGCTGATAGCGGAGGAGCTTACACTGTCTAAAGCTGAGCCAGTTGAGTACATGACTACAATGTTAACGCAAGAGAACAATGATGAGGAGATAAGGCTTGGCACCCTAATGTCAGAAGTAGAAATCTTTAAGACCCAGCATAATGGATTAAAACACAACTTGCACATGGAACAAGCAGAGAAAGAAAATATGAAGAAAAAAATATCTCATTTAGAAGGAGAGCTGCAGAAGAAGCAAGAAGAACTAAGTGCTGTAGAAAAGAGGATGAATAATAGCAAAGGGCTAGCAACAGCCTCAAATATGGATTCATGGCACTACGAGAGTGCTGCATCAGAAACGCAGAAGGGAATGGATGATGCAAACACCCCTGTTGACAAGTCTGTAATAGGAAGAACGATGTGCAATTCAGATGAGAACAAAGCTTGTCTAGCAGCACATACTAGTGTAGTGCAAACTTGCTCGGAAAATGAGGCTATTCTCTTCAATTATGATCATGCAAATGAAGAGATGTCAAGGGAACTTCTTACTTCTCAAGCAGATCTTAATGAAGTGACAATACTAAAGGAAAGGAACGAATATATGGGAACTCAGCTGAAAGAAATGGAAGAGAGATATTCAGAGATTAGTCTCAAGTTCGCTGAGGTAGAGGGAGAAAGACAACAGCTTGTTATGGCACTACGTAATCTCAGGAATGGTAAGAACTAG 2664 0.387 MFKSRSKKNKIKAVFKLQFQATQVPKMKKSTVMIALVPDDVGKPKVKLEKVSVQDGTCLWEKPIFESVKLVRDTKSGKLQEKIYHFVVSTGSSKSGFLGESSIDLADFAAETEPLTVSLPLKFANSGAILHVTIQNVEGVHIDQRNEEDNGNGSLRHQLSICSADEGSHNVHDFPKLLPTLRQNSMPSGTIEAIATKVHMHWGSMGSASDRSLGNYWTNSLEDTLPRERLQEPSDNVTENLKSEIASLKRKVEASELELQSLQKLMEKECSRGQSMSRQIISLREERNMIKTKYEQLLSQQNVNDKTKTSKALQNEIEDARLKLEAIKEELVHEKEFSSNIQLQLQKTQNSNSELLLAVRELEAMLEQKNKELLDNKEHDATELGTLKQKIADQNGQLDIYYKQREELNDHIKELNFECELLKKENLNMSLRLKHGEAQHIVLQNKHSASLATIEQLESEVQRLEEKIKKQAYDFSDSLLYINELENRVGDLEKQAEKIEEDFHAMKCAKLEQEARAIQAEETLIKTRHDNGLTCQHFQDEYRSLSVEMTLKVEENEKKTMEAYAEADELRKQKKHTEEMLQKCNQELGLITNQNELKLQQLLNQIDSKEKTIEMMSEKLEAKSKQLEDVQWHMVEKDEALAKQIQFLRIEIRKLIAEELTLSKAEPVEYMTTMLTQENNDEEIRLGTLMSEVEIFKTQHNGLKHNLHMEQAEKENMKKKISHLEGELQKKQEELSAVEKRMNNSKGLATASNMDSWHYESAASETQKGMDDANTPVDKSVIGRTMCNSDENKACLAAHTSVVQTCSENEAILFNYDHANEEMSRELLTSQADLNEVTILKERNEYMGTQLKEMEERYSEISLKFAEVEGERQQLVMALRNLRNGKN 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00642 887 Coils Coil 345 379 - -
Cca08g00642 887 Coils Coil 398 425 - -
Cca08g00642 887 PANTHER BNAC08G20130D PROTEIN 1 886 - -
Cca08g00642 887 ProSiteProfiles C2 NT-type domain profile. 3 138 IPR019448 -
Cca08g00642 887 Coils Coil 851 871 - -
Cca08g00642 887 Coils Coil 700 748 - -
Cca08g00642 887 Coils Coil 280 300 - -
Cca08g00642 887 Coils Coil 592 626 - -
Cca08g00642 887 Coils Coil 482 502 - -
Cca08g00642 887 Coils Coil 238 272 - -
Cca08g00642 887 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 886 - -
Cca08g00642 887 Coils Coil 303 330 - -
Cca08g00642 887 Coils Coil 553 587 - -
Cca08g00642 887 Coils Coil 447 474 - -
Cca08g00642 887 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 7 135 IPR019448 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00642 Cca-Chr8 11615591 11621019 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00642 - - gmx:100800902 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00642 08 11615591 11621019 Cca02g02265 02 43185663 43191150 PCT