Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00617 ATGGGGAATTCATTTGGGTGTTCGGCCTCCGGCGAGAGGTTGGTGTCGGCGGCGAGGGACGGCGATTTGGTGGAGGCGAAGATGCTTCTAGAATGCAACCCTTGTCTTGCAAAGTATTCGACTTTTGGGGGTCTCAATTCACCTCTTCATTTTGCAGCGTCGAAGGGCCATAACGAGATTGTCGCATTGTTGCTTGAAAATGGAGCTGATGTGAATTCGAGGAATTATTGTGGGCAGACCGCTTTGATGCAAGCTTGTAGATATGGTCACTGGGAAGTTGTACAGACCCTTCTGCTCTTCAGATGCAATGTTATGAAAGCAGATTATCTCAGCGGGAGGACAGCTCTTCACTTTGCAGCCATCAATGGGCACGCAAGATGCATTAGACTTGTTGTGGCTGACTTTGTTCCAAGTGTTCCTTATGAAGCTTTACATTCTCGCATGGATGCTGAGGGTAATGGATCACATGTGAAACACAAAAATGAACAAAGTGCGCTGTCCAAGTTTGTAAACAAAACTGCAGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTTCAACTGCTTCTAGATCTCAATGCAAATGTGTCAGCTTCGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCTAGTCGGATGGCTTTGAATTGCAATGGGTGGCTTCCACTTGATGTTGCTAGGATGTGGGGACGTCATTGGCTTGAACCATTGCTGGCACCAACTTCTGATGCCACAATATCATCATTCCCTTCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTGCTCAACATTGCCAGAGAGTGTGGATTGCAATCAAGTACATCCTCCTCTAATGAAAATGATGTTTGTGCTGTCTGCCTGGAGAGGCCATGTTCAGTGGCTGCCGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTTTATCTTTGCTCAACAACCAATGTTTCTTCTGAATCATCTGGAGGACCTCCTGGCTCTATCCCTTGCCCTCTTTGTAGGCATGGAATTGTCTCTTTCATCAAGTTACCAGGCTCCCAATCCAAAGAAAACAAATTACACGTGTCCCTCAGCCTGTGTACGCCATGCATGCTACATCCGTGTCACCTGGACCGACAATCTCTTCATACCCCCGAGATTCGAAGGAACCGTGTGGCTTCTGTTCCATCGGAGATGCTTTGCCCCGTCACTTGTACTCCATTTCCATCTGTAGCAATTCCTCTGTGTACATGCAATGATGGTCCTTGTCCAACATTTGAATCCCGGGAAGCTGAAACGCAAGATGATTCGCCTCGTCACTCACAAGCATTGACAATGGATCAGGATAAAATGGATGGTCCTAGGTTGGAGAAAACAACATGCTCAAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1536 0.4603 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSVPYEALHSRMDAEGNGSHVKHKNEQSALSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANVSASTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLAPTSDATISSFPSSNYLSLPLMSVLNIARECGLQSSTSSSNENDVCAVCLERPCSVAAEGCGHELCVRCALYLCSTTNVSSESSGGPPGSIPCPLCRHGIVSFIKLPGSQSKENKLHVSLSLCTPCMLHPCHLDRQSLHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPTFESREAETQDDSPRHSQALTMDQDKMDGPRLEKTTCSSMFWGRRSCSREHQCNSEINA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00617 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 511 - -
Cca08g00617 511 SMART ring_2 318 368 IPR001841 -
Cca08g00617 511 SUPERFAMILY Ankyrin repeat 14 272 IPR036770 -
Cca08g00617 511 Pfam Ankyrin repeats (many copies) 168 197 IPR002110 GO:0005515
Cca08g00617 511 ProSitePatterns Zinc finger RING-type signature. 333 342 IPR017907 -
Cca08g00617 511 ProSiteProfiles Ankyrin repeat region circular profile. 219 245 - -
Cca08g00617 511 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Cca08g00617 511 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Cca08g00617 511 PRINTS Ankyrin repeat signature 192 206 IPR002110 GO:0005515
Cca08g00617 511 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Cca08g00617 511 SMART ANK_2a 111 141 IPR002110 GO:0005515
Cca08g00617 511 SMART ANK_2a 77 106 IPR002110 GO:0005515
Cca08g00617 511 SMART ANK_2a 44 73 IPR002110 GO:0005515
Cca08g00617 511 SMART ANK_2a 219 248 IPR002110 GO:0005515
Cca08g00617 511 SMART ANK_2a 176 205 IPR002110 GO:0005515
Cca08g00617 511 MobiDBLite consensus disorder prediction 456 476 - -
Cca08g00617 511 ProSiteProfiles Zinc finger RING-type profile. 318 369 IPR001841 -
Cca08g00617 511 PANTHER HOMEOBOX PROTEIN WARIAI 1 511 - -
Cca08g00617 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 390 IPR013083 -
Cca08g00617 511 MobiDBLite consensus disorder prediction 457 476 - -
Cca08g00617 511 Gene3D - 140 280 IPR036770 -
Cca08g00617 511 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Cca08g00617 511 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Cca08g00617 511 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Cca08g00617 511 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Cca08g00617 511 Pfam Ankyrin repeats (3 copies) 213 269 IPR002110 GO:0005515
Cca08g00617 511 Gene3D - 6 135 IPR036770 -
Cca08g00617 511 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Cca08g00617 511 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Cca08g00617 511 SUPERFAMILY RING/U-box 313 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00617 Cca-Chr8 10940557 10949863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00617 17 272 Miscellaneous Gene Families AT5G02620 26.437 1.75e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00617 K19044 - gmx:100812809 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00617 08 10940557 10949863 Cca08g00617 08 10940557 10949863 ECH
Cca08g00617 08 10940557 10949863 Cca02g02282 02 43350042 43354708 PCT