Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02282 ATGCAAGCTTGTAGATATGGGCATTGGGAAGTTGTACAGACACTTTTGCTCTTCAGATGCAATGTTATGAGAGCTGATTATCTTACTGGGAGGACAGCACTTCACTTTGCAGCTGTGCATGGGCATGTAAGGTGTATTAGACTTGTTGTGGCTGACTTTGTACCAAGTGCTCCTTATCAAGCTCTAAATGCCTGCACGGATGTTGACAAGGGTGGTGGATCAAATGTGAAAGGCAAACATGAGCAAAGTGCCCTGTCCAAGTTTGTAAATAAGGCTGCTGATGGTGGTATCACTGCCCTTCATATGGCTGCGTTAAATGGGTACTTTGATTGTGTACAACTGCTGCTTGATCTTAATGCAAATGTGTCTGCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGTGCTGGAAGTACTCCATTGCATTATGCTGCTTGTGGGGGCAATTTAAAATGCTGTCAGATCCTTGTTGCACGAGGTGCAAGTCGGATGGCTTTAAATTGCAATGGGTGGCTTCCTCTTGACATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTACTGGCACCTAGTTCTGATACCACAATACCTACATTCTCTCATTCAAAATACTTGTCCTTGCCTCTTATGAGTGTGCTCAACATAGCTAGAGAGTATGGATTGCGATCATCTGCTTCCTCCTCGGATGAGATTGACTTTTGTGCTGTATGCTTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAACAATGTTTCTTCCGAAATGCTTGGCCCTCCTGGCTCTATTCCTTGCCCCCTTTGTAGACATGGAATTGTATCTTTCGTGAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAATTACACGTGTCCCTTGGCCTGTGTACCCCATGCATGCTACATCCAGGTGACATAGACCGGCCATCCCTTTCTCGTACACCAGAGATTGGAAGAAATCGTGTAGCTTCTGTTCCTTCGGAGATACTCTGCCCCGTCACTTGTAGTCCATTTCCATCTATGGCAATTCCCATGTGTACCTGCAATGATGGTCCATGTCCATCATTTGAACCCCGTGAAGTAGAAACACAAGATGAATCAGCTCATCATTCTCAAGAATCAACAATGGATCAGGATAAAGTTGAAGGGCCAAGACTGGATAAAACAACCTGTTCTAGCATGTTCTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAAATAAATGCTTGA 1293 0.4447 MQACRYGHWEVVQTLLLFRCNVMRADYLTGRTALHFAAVHGHVRCIRLVVADFVPSAPYQALNACTDVDKGGGSNVKGKHEQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLNANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILVARGASRMALNCNGWLPLDIARMWGRHWLEQLLAPSSDTTIPTFSHSKYLSLPLMSVLNIAREYGLRSSASSSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHVSLGLCTPCMLHPGDIDRPSLSRTPEIGRNRVASVPSEILCPVTCSPFPSMAIPMCTCNDGPCPSFEPREVETQDESAHHSQESTMDQDKVEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02282 430 SMART ANK_2a 138 167 IPR002110 GO:0005515
Cca02g02282 430 SMART ANK_2a 29 59 IPR002110 GO:0005515
Cca02g02282 430 SMART ANK_2a 95 124 IPR002110 GO:0005515
Cca02g02282 430 ProSiteProfiles Ankyrin repeat region circular profile. 29 50 - -
Cca02g02282 430 SUPERFAMILY RING/U-box 232 293 - -
Cca02g02282 430 PANTHER HOMEOBOX PROTEIN WARIAI 1 430 - -
Cca02g02282 430 Pfam Ankyrin repeats (3 copies) 1 123 IPR002110 GO:0005515
Cca02g02282 430 Pfam Ankyrin repeats (3 copies) 131 193 IPR002110 GO:0005515
Cca02g02282 430 ProSiteProfiles Ankyrin repeat region circular profile. 138 164 - -
Cca02g02282 430 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 430 - -
Cca02g02282 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 306 IPR013083 -
Cca02g02282 430 SUPERFAMILY Ankyrin repeat 2 192 IPR036770 -
Cca02g02282 430 MobiDBLite consensus disorder prediction 375 402 - -
Cca02g02282 430 ProSiteProfiles Ankyrin repeat profile. 138 170 IPR002110 GO:0005515
Cca02g02282 430 MobiDBLite consensus disorder prediction 376 402 - -
Cca02g02282 430 PRINTS Ankyrin repeat signature 30 45 IPR002110 GO:0005515
Cca02g02282 430 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Cca02g02282 430 Gene3D - 1 204 IPR036770 -
Cca02g02282 430 ProSiteProfiles Ankyrin repeat region circular profile. 95 124 - -
Cca02g02282 430 ProSiteProfiles Ankyrin repeat profile. 29 50 IPR002110 GO:0005515
Cca02g02282 430 ProSitePatterns Zinc finger RING-type signature. 252 261 IPR017907 -
Cca02g02282 430 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Cca02g02282 430 ProSiteProfiles Zinc finger RING-type profile. 237 287 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02282 Cca-Chr2 43350042 43354708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02282 3 169 Miscellaneous Gene Families AT5G60070 31.285 1.56e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02282 K19044 - gmx:100793886 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02282 02 43350042 43354708 Cca02g02282 02 43350042 43354708 ECH
Cca08g00617 08 10940557 10949863 Cca02g02282 02 43350042 43354708 PCT