Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00612 ATGTCGTCGCGGAGAGATCTAGAAAGTGGTGGCGCAACCAAGAACAGCAACATCACCTACTCTGCTGCTCCCACGTCCTACGTTTTCGATTCTCAAGTCCATTGGACATCGTGGCTCGTGCCTCTCTTTGTGGCAGTTAACGTTGTCGTTTTCGTTGCGGCCATGTATGTCAACAATTGTCCCAGCAAAAATTTCAACTTTCAAGGGGACTGTGTTGCCACCTTCCTGGGTCGCTTCTCCTTCCAGCCCCTTAGGGAGAATCCCTTGTTTGGGCCTTCTTCGTGGACCTTAATAAAGATGGGAGCACTTCAATGGGATGATGTCGTGAATCATCATCAAGGATGGAGACTTGTCACTTGCATTTGGTTACATGCTGGAGTTGTTCATTTGGCAGCAAACATGTTGAGTCTGGTTTTCATTGGCATTCGCCTTGAACAACAATTCGGGTTTGTGAGGATAGGAATCATTTACCTATTGTCTGGATTTGGAGGGAGTGTACTGTCTTCTCTATTTATTAGAAACAACATCTCTGTTGGTGCTTCTGGTGCTCTTTTTGGACTTCTTGGAGCAATGCTTTCAGAACTTATTACTAATTGGAGTATTTATACCAATAAGGCAGCTGCTTTGTTCACACTCCTGTTTATTATTGTCATCAATCTCGCCATTGGAATGTTGCCACATGTTGATAACTTTGCTCATATTGGGGGATTCCTCACAGGATTTCTTCTTGGTTTTATTTTGCTGCTCCGCCCTCAATTTGGGTGGTTAGAGCAGCGGCGTCTCCCAGCCGGTGTTCGCCTCAAGTCAAAATACAAGGCTTACCAATATGTTCTGTGGATTGTTTCTATTGTTTTATTGATTGTTGGGTTATGCATTGCTCTTGTGATGCTATTTAGGGGTGAGAGTGGGTATGATCACTGCCATTGGTGTCACTATCTAACGTGTGTTCCAACTTCTAAATGGAAATGCAATGACAATTAA 981 0.4393 MSSRRDLESGGATKNSNITYSAAPTSYVFDSQVHWTSWLVPLFVAVNVVVFVAAMYVNNCPSKNFNFQGDCVATFLGRFSFQPLRENPLFGPSSWTLIKMGALQWDDVVNHHQGWRLVTCIWLHAGVVHLAANMLSLVFIGIRLEQQFGFVRIGIIYLLSGFGGSVLSSLFIRNNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLLFIIVINLAIGMLPHVDNFAHIGGFLTGFLLGFILLLRPQFGWLEQRRLPAGVRLKSKYKAYQYVLWIVSIVLLIVGLCIALVMLFRGESGYDHCHWCHYLTCVPTSKWKCNDN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00612 326 Gene3D - 31 250 IPR035952 -
Cca08g00612 326 Pfam Rhomboid family 110 251 IPR022764 GO:0004252|GO:0016021
Cca08g00612 326 PANTHER RHOMBOID-RELATED 5 326 IPR002610 GO:0004252|GO:0006508|GO:0016021
Cca08g00612 326 PANTHER RHOMBOID-LIKE PROTEIN 3 5 326 - -
Cca08g00612 326 SUPERFAMILY Rhomboid-like 35 252 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00612 Cca-Chr8 10843887 10847197 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00612 - - gmx:100813345 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02284 02 43388966 43392015 Cca08g00612 08 10843887 10847197 ECH
Cca08g00612 08 10843887 10847197 Cca08g00612 08 10843887 10847197 ECH