Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02284 ATGGCGAGGAGAGATCTCGAGGGTGGCGGTGCTGGAATCAAGAACAATAGAACAGACGAAAACTACTCTGCGCCTCATGTTTACGAAGCTGAGACCCATTGGACATCATGGCTTGTGCCTATGTTTGTAATTGCTAATATTGCTGTTTTCGTTGTAACCATGTACATCAACAATTGTCCTAAGCACAACCTCGGTCTACAAGGTGGCTGCGTAGCCAGGTTCCTTGGAAGGTTCTCCTTTCAGCCTATGCAGGAGAATCCCTTACTTGGTCCTTCCTCTTCAACATTGACCAAGATGGGAGCCCTTCGGTGGGATAATGTTGTGAATCGGCACCAGGGGTGGAGACTTGTCACTTGCATTTGGCTACATGCTGGAATCATTCATTTGCTAGCTAACATGTTGAGCCTCGTCTTCATTGGCATTCGTCTTGAACAGCAATTCGGATTTTTGAAGATTGGATTCATATACCTGTTGTCTGGGTTTGGCGGAAGTGTATTGTCATCTCTGTTTATCAGAGACCACATCTCCGTTGGTGCTTCTGGTGCCCTTTTTGGACTTCTTGGCGCAATGCTGTCTGAACTTATCACAAACTGGACTATATATTCCAATAAAGCAATGGCTTTAGTCACCCTTCTAGTGATCATTGTGATCAACCTTGGCATTGGCATTTTACCACACGTAGATAATTTTGCTCACATTGGAGGATTCCTGGTGGGGTTTCTCCTAGGTTTTATTATGCTGCCACGTCCTCAGTTTGGGTGGTTAGAGCAGCGACATCTTCCAGCTGGTGTTCGTTTGAAGTCAAAGTACAAGCCTTACCAATATGTTCTTTGGATTGTGTCTCTCATTCTCTTGATTGCAGGGTTAGCAATTGCATTGGTGATGCTGTTCAGGGGTGAGAAAGGGTATGACCACTGCCATTGGTGTCGCTACCTAACATGTGTACCGACTTCTAAATGGGAATGCAGCGATGACAGCTAA 981 0.4546 MARRDLEGGGAGIKNNRTDENYSAPHVYEAETHWTSWLVPMFVIANIAVFVVTMYINNCPKHNLGLQGGCVARFLGRFSFQPMQENPLLGPSSSTLTKMGALRWDNVVNRHQGWRLVTCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFLKIGFIYLLSGFGGSVLSSLFIRDHISVGASGALFGLLGAMLSELITNWTIYSNKAMALVTLLVIIVINLGIGILPHVDNFAHIGGFLVGFLLGFIMLPRPQFGWLEQRHLPAGVRLKSKYKPYQYVLWIVSLILLIAGLAIALVMLFRGEKGYDHCHWCRYLTCVPTSKWECSDDS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02284 326 PANTHER RHOMBOID-LIKE PROTEIN 3 2 324 - -
Cca02g02284 326 Pfam Rhomboid family 108 250 IPR022764 GO:0004252|GO:0016021
Cca02g02284 326 Gene3D - 32 249 IPR035952 -
Cca02g02284 326 PANTHER RHOMBOID-RELATED 2 324 IPR002610 GO:0004252|GO:0006508|GO:0016021
Cca02g02284 326 SUPERFAMILY Rhomboid-like 34 251 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02284 Cca-Chr2 43388966 43392015 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02284 - - gmx:100784224 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02284 02 43388966 43392015 Cca08g00612 08 10843887 10847197 ECH
Cca02g02284 02 43388966 43392015 Cca02g02284 02 43388966 43392015 ECH