Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00609 aTGCCTGCCGCCGCCAAACCCACCAAGCCCTGCAAAAAGACAAACCTCTACACCCTCCTCGCCCTCCTCTGCACCCTCTCCTACCTCCTCGGCGCATACCAACAACCCACCACCACCACCAAAACCACACCCACACCATGCCCTCACAACCCCACGCTCACCACCCACCTAGACTTCTCCTCTCACCACAAcgccaccgccgccaacctccctccctccgccgccagcccccgcttccccccctgccgcgccTCGCTCACCGAGTACACGCCCTGCGAGGACCACGCGCGCTCCCTGCGCTACTCGCGCCACAGAATGGTGTACCGCGAGCGCCACTGCCCGGGGACGGCGGAGGCCCTGAAGTGCCGCGTCCCCGCGCCCCACGGCTACCGCAACCCCTTCCCGTGGCCGGCCAGCAGGGACGTCGCCTGGTACGCCAACGTCCCCCACCGCCAGCTCACCGTCGAGAAGGCCGTCCAGAACTGGATCCGCTACGACGGCGACCGCTTCCACTTCCCCGGCGGCGGAACCATGTTCCCCGACGGCGCCGATAACTACATCGACGACATTGCTCGCTTGGTTAACCTCCGAGACGGTTCCGTCCGTACCGCGGTGGATACTGGCTGTGGGGTTGCTAGTTGGGGTGCGTATCTTCTGTCACGTGAGATCATAACAATGTCAATTGCACCAAGGGACACCCACGAAGCACAAGTTCAGTTTGCTCTTGAAAGAGGGGTTCCTGCAATTATTGGGGTCCTAGCCTCTAAGAGGTTGCCTTTCCCTTCAAGAGCTTTTGACATGGCACACTGTTCTCGCTGCCTCATTCCATGGGCTGAATATGATGGGCTTTATTTAAATGAAATTGATCGAATTCTACGGCCTGGTGGGTATTGGATTCTATCTGGGCCACCAATCCGGTGGAGAAAACATTGGAAAGGATGGGAAAGAACACAGGAGGATTTGAATGCAGAGCAGACCAAAATTGAGAATGTAGCTAAAAGCCTGTGCTGGAACAAGCTAGTGGAGAAAGATGACATAGCCATTTGGCAGAAAGCAAAAAACCATTTGGATTGCAAAGCCAAATCTAAGCTCACTCAAAACAGACCTTTCTGCAAGCCACAGAGTAACCCTGACAAAGCCTGGTACACAGATATGCAAACATGTTTGAGTCCTCTGCCTGAAGTGTCCAACAAAGAAGAAACTGCAGGTGGGGCATTGAAAAAATGGCCTGCCAGACTAAAAGCAACACCACCAAGGATTTCTAAGGGGACCATAAAGGGGGTCACTTCCGAAACTTTCTCAACAGATAATGAGCTGTGGAAGAAAAGGATATCATATTACAAGAAGGTTAATAATCAACTAGGAAAAGCTGGGAGATACCGCAACCTTTTGGACATGAATGCTTACTTGGGTGGATTTGCTGCTGCACTAATAGATTCTCCTGTTTGGGTCATGAATGTGGTTCCTGTGCAGGCCAAGGTTGACACACTTGGTGCAATATATGAAAGGGGGTTGATTGGAACATACCATAATTGGTGTGAAGCAATGTCTACTTATCCTAGAACATATGACTTAATTCATGGTGATTCAGTTTTCAGCCTCTACAATGACAGATGTGAATTGGAAGACATTTTGTTAGAAATGGATAGGATTCTTAGACCTGAAGGAAGTGTGATCATACGAGATGATGTTGATATATTGGTGAAGGTTAAGAGTATAGTCAATGGCATGGATTGGGAGAGTCAAATCGTGGATCATGAAGATGGGCCTCTTGAAAGAGAGAAACTTTTATTTGCTGTGAAGAATTATTGGACATCTCCAGCCACTTCCGACAATAATAGTTAA 1845 0.4829 MPAAAKPTKPCKKTNLYTLLALLCTLSYLLGAYQQPTTTTKTTPTPCPHNPTLTTHLDFSSHHNATAANLPPSAASPRFPPCRASLTEYTPCEDHARSLRYSRHRMVYRERHCPGTAEALKCRVPAPHGYRNPFPWPASRDVAWYANVPHRQLTVEKAVQNWIRYDGDRFHFPGGGTMFPDGADNYIDDIARLVNLRDGSVRTAVDTGCGVASWGAYLLSREIITMSIAPRDTHEAQVQFALERGVPAIIGVLASKRLPFPSRAFDMAHCSRCLIPWAEYDGLYLNEIDRILRPGGYWILSGPPIRWRKHWKGWERTQEDLNAEQTKIENVAKSLCWNKLVEKDDIAIWQKAKNHLDCKAKSKLTQNRPFCKPQSNPDKAWYTDMQTCLSPLPEVSNKEETAGGALKKWPARLKATPPRISKGTIKGVTSETFSTDNELWKKRISYYKKVNNQLGKAGRYRNLLDMNAYLGGFAAALIDSPVWVMNVVPVQAKVDTLGAIYERGLIGTYHNWCEAMSTYPRTYDLIHGDSVFSLYNDRCELEDILLEMDRILRPEGSVIIRDDVDILVKVKSIVNGMDWESQIVDHEDGPLEREKLLFAVKNYWTSPATSDNNS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00609 614 PANTHER METHYLTRANSFERASE PMT15-RELATED 10 609 - -
Cca08g00609 614 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 312 IPR029063 -
Cca08g00609 614 CDD AdoMet_MTases 203 297 - -
Cca08g00609 614 Gene3D Vaccinia Virus protein VP39 164 347 IPR029063 -
Cca08g00609 614 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 88 601 IPR004159 GO:0008168
Cca08g00609 614 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 10 609 IPR004159 GO:0008168
Cca08g00609 614 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 447 564 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00609 Cca-Chr8 10803837 10810184 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00609 - - gmx:100814235 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02287 02 43412765 43417656 Cca08g00609 08 10803837 10810184 ECH
Cca08g00609 08 10803837 10810184 Cca08g00609 08 10803837 10810184 ECH