Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02287 ATGGCCAACAATCATTTTTCTTCTTCTTTTTGTTGTTGTGCCCGCTACGGCAGCGTTTTGAAGTCGAGAAAAACACACATCTACGCACTCATTCTCCTTGCCTGCGTGGCCTCCTATCTCCTGGCCGCGCACCAGCAGGAAGCGCGGCTCTCCGCCCTGAACCTCTCCGTCTTCCTGCCGTGCGACGGTTTGAATGTCTCGGCGCCTTCCAGAAGCTTCCCTCGGTGCAGCGCCAACTTCACGGAGTACACGCCGTGCGAGGATCCGCAGCGGTCGCTAGCGTACAAGCGGAGCAGAATGATATACAGAGAGAGGCACTGTCCGCAGGAAGCGTTGAAGTGTAGGGTTCCTGCGCCCTACGGATACCGGAACCCCTTCCCATGGCCCGCCAGCAGGGACCGAGCGTGGTTCGCCAACGTCCCCCACCGCGAGCTCACCGTCGAGAAGGCCGTTCAGAACTGGATCCGCTCCGACGGCGACCGCTTCATCTTCCCCGGCGGCGGAACCACCTTCCCCAACGGCGCTCAGGCCTACATTGAGGACATCGGAAAGTTGATTAATCTTAAAGATGGTTCCCTCAGGACTGCTCTTGATACTGGCTGTGGGGTTGCTAGCTGGGGAGCGTATCTTCTATCACGTGACATCGTAACAATGTCTATTGCACCAAGGGATACCCACGAAGCACAAGTTCAGTTTGCTCTGGAGCGAGGAGTTCCTGCATTCATCGGAATCCTAGCCACTAAGAGGCTCCCTTTCCCTTCCAGAGCTTTTGACATCTCCCATTGTTCTCGCTGCCTCATCCCTTGGGCTCAATATGATGGCATTTTTCTGAACGAAGTGGATCGAGTTCTACGCCCTGGCGGCTATTGGATTCTATCTGGCCCACCAATCAACTGGAAGAAATACTGGAAAGGGTGGCAAAGAAAAAAGAAGGACCTGCAAGAAGAGCAGACTAAAATTGAGAACGTTGCCAAAAGCCTTTGCTGGAACAAGCTAATCGAGAAGGACGATATTGCTATCTGGCAGAAACCCAAAAACCATTTTCATTGCAAGCCCACCCAACACCGCTCTTTCTGCACTGCAGTTGCACAAAACCATCCCGACAAGGCCTGGTATACTGACATGGAAACGTGTTTGACTCCTCTTCCTCAAGTGTCTAGCAAACAAGAAACCGCAGGTGGGCTACTGGACAATTGGCCAAAGAGATTCAAATCCATCCCCCCAAGGATTTATCAGGCTACAATACAAGGGATTACACCTGAAACTTATTCAGAAAATTCTGACATGTGGAACAAAAGGATATCTTATTATAAGACACTCAATAATCAACTAGGAACTGGGAGATATCGCAATCTTTTGGACATGAATGCCTATTTGGGTGGATTTGCCGCTGCACTAATTCAGGACCCTGTTTGGGTCATGAATGTGGTTCCTGTTCAGGCTAAGGTTAACACACTTGGGGTCATATATGAACGCGGATTCATTGGAATATACCATGACTGGTGTGAAGCAATGTCTACTTATCCTAGGACTTATGATCTGATTCATGCTGATTCACTGTTCAGCCTTTACAGTAACAGATGTGAATTGGAAGACATTATGCTCGAAATGGATAGAATTCTTAGACCGGAAGGATGTGTTATCATCCGAGATGATGTTGATATATTGGTAAAAGTGAAGAGCATCGTGAATGGACTGGAATGGGATAGTATAATTGTAGACCACGAAGATGGTCCTCTTGTAAGAGAGAAACTTCTATTTGCTGTGAAGAAGTATTGGACAGCTCCAGCAGCTTCTGACAAGACTGATTAA 1812 0.4895 MANNHFSSSFCCCARYGSVLKSRKTHIYALILLACVASYLLAAHQQEARLSALNLSVFLPCDGLNVSAPSRSFPRCSANFTEYTPCEDPQRSLAYKRSRMIYRERHCPQEALKCRVPAPYGYRNPFPWPASRDRAWFANVPHRELTVEKAVQNWIRSDGDRFIFPGGGTTFPNGAQAYIEDIGKLINLKDGSLRTALDTGCGVASWGAYLLSRDIVTMSIAPRDTHEAQVQFALERGVPAFIGILATKRLPFPSRAFDISHCSRCLIPWAQYDGIFLNEVDRVLRPGGYWILSGPPINWKKYWKGWQRKKKDLQEEQTKIENVAKSLCWNKLIEKDDIAIWQKPKNHFHCKPTQHRSFCTAVAQNHPDKAWYTDMETCLTPLPQVSSKQETAGGLLDNWPKRFKSIPPRIYQATIQGITPETYSENSDMWNKRISYYKTLNNQLGTGRYRNLLDMNAYLGGFAAALIQDPVWVMNVVPVQAKVNTLGVIYERGFIGIYHDWCEAMSTYPRTYDLIHADSLFSLYSNRCELEDIMLEMDRILRPEGCVIIRDDVDILVKVKSIVNGLEWDSIIVDHEDGPLVREKLLFAVKKYWTAPAASDKTD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02287 603 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 65 598 IPR004159 GO:0008168
Cca02g02287 603 PANTHER METHYLTRANSFERASE PMT15-RELATED 65 598 - -
Cca02g02287 603 Gene3D Vaccinia Virus protein VP39 173 358 IPR029063 -
Cca02g02287 603 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 428 553 IPR029063 -
Cca02g02287 603 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 82 590 IPR004159 GO:0008168
Cca02g02287 603 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 104 309 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02287 Cca-Chr2 43412765 43417656 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02287 - - gmx:100778314 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02287 02 43412765 43417656 Cca08g00609 08 10803837 10810184 ECH
Cca02g02287 02 43412765 43417656 Cca02g02287 02 43412765 43417656 ECH