Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00603 ATGGGGGCTGGTGTTTCTACAACTGCAGCAGAAAATGATGATGGAAGCACTTTTTCTGTGTTCTCAGATACAGGCCTTGATGATGTCCCTGAGAATTGCATATCTTCATTGATGATGAGTTTTGATCCACAAGAGATTTGCACATTGGCCAGAGTGAACAAAACTTTCCATAGAGCTTCATCTGCTGACTTTGTTTGGGAATCGAAGTTGCCACCAAGCTACAAATTTCTTGTCAATAAAGTAGTTGGTGAACAAAATCTTGGTTCCATGACCAAGAAAGAGATCTATGCCAAACTATGCAGACCCAATTTCTTTGATGGTGGAACCAAAGAAGTTTGGCTAGACAGATGCAGTGGACAAGTATGTTTGTTCATTTCATCAAAATCCTTCAAGATTACAGGAATAGATGATAGAAGATATTGGAATTATATTCCAACTGAGGAATCCAGGTTCAAGAGTGTTGCATACCTTCAACAAATGTGGTGGGTTGAAGTGATAGGGGACCTAGAGTTTGAGTTTCCCAAAGGGAACTATAGTGTATTTTTCAGGCTTCAATTGGGCAAAACCTCAAAGAGATTGGGCCGGCGCGTCTGCAACGTTGATCAAGTTCATGGCTGGGACATCAAGCCCGTTAGATTTCAACTATCTACATCGGACGGCCAGAGTTCACTCTCCCAGTGCTATTTGCGTGGGCCTGGAGAATGGGCCCACTATTATGTTGGAGACTTCGCAATTGAGAAGCCCAATGGGCTAACAAACATCAAGTTTTCTTTGGCCCAAATTGATTGCACTCACACCAAAGGTGGTCTTTGCATAGATGGGGTAGTGATTTGCCCAACAGAGTTATCAGAAAGATTGAAACAACTTTAG 870 0.423 MGAGVSTTAAENDDGSTFSVFSDTGLDDVPENCISSLMMSFDPQEICTLARVNKTFHRASSADFVWESKLPPSYKFLVNKVVGEQNLGSMTKKEIYAKLCRPNFFDGGTKEVWLDRCSGQVCLFISSKSFKITGIDDRRYWNYIPTEESRFKSVAYLQQMWWVEVIGDLEFEFPKGNYSVFFRLQLGKTSKRLGRRVCNVDQVHGWDIKPVRFQLSTSDGQSSLSQCYLRGPGEWAHYYVGDFAIEKPNGLTNIKFSLAQIDCTHTKGGLCIDGVVICPTELSERLKQL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00603 289 Pfam Phloem protein 2 121 279 IPR025886 -
Cca08g00603 289 PANTHER F-BOX PROTEIN 1 289 - -
Cca08g00603 289 SUPERFAMILY F-box domain 21 84 IPR036047 GO:0005515
Cca08g00603 289 PANTHER F-BOX PROTEIN PP2-A15 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00603 Cca-Chr8 10586440 10589330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00603 - - gmx:100816360 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02289 02 43450660 43455250 Cca08g00603 08 10586440 10589330 ECH
Cca08g00603 08 10586440 10589330 Cca08g00603 08 10586440 10589330 ECH
Cca08g00603 08 10586440 10589330 Cca02g02289 02 43450660 43455250 PCT