Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02289 ATGGGGGCTAGTGTTTCTTCAACTAATATATTAGAAAATGAAGAAGGGTCTATTTGTTCATCATCAAGACCTGGTCTTGGTGATATCCCTGAGAGTTGCATCTCCTCCTTGTTCATGAATCTTGATCCACCAGATATATGCAAATTGGCCACCGTCAATAGGGCCTTTCACCGAGCTTCCTCAGCTGATTTTCTCTGGGAATCCAAGTTGCCACCAAGTTACAAGTTTCTTGCTAAAAAAGTTATTGGTGAAGAAAATATTGCTACTATGACTAAGAAAGAGATTTATGCCAAACTTTGCCTACCCAATCGTTTTGATGGTGCCACCAAAGAAGTTTGGTTGGACAAATGTAGTGGACAAGTTTGTTTGTTCATGTCATCCAAGTCCTTGAAGATAACAGGAATAGAGGACAGGAGATACTGGAACTATATTCCAACCGAAGAATCCAGGTTCAATAGTGTTGCATATCTTCAACAAATGTGGTGGGTTGAAGTGGTGGGGGAGCTAGAGTTTGAATTCCCTGTGGGGAGATACAGCTTAGTTTTCAGACTCCAATTGGGCAAGGCCTCCAAGAGATTGGGCCGGCGCGTGTGCAACGCTGATCAAGTCCATGGCTGGGACATCAAGCCCGTCCGATTCCAACTCTCCACATCAGACGGCCAGCGTTCGCTCTCAGAGTGTTACTTGAGTAGGCCTGGGGAGTGGGTCTACTACCATGTAGGAGATTTCGTGATTGAAAAGCCCAATGAGCTTATAAACATCAAGTTTTCCTTGGCCCAAATTGATTGCACTCACACCAAGGGTGGCCTCTGCGTAGATAGTGCCATAATTTGCCCAAAGGAGTTTAGAGAAAGACTCAAACAACGTTAG 870 0.4448 MGASVSSTNILENEEGSICSSSRPGLGDIPESCISSLFMNLDPPDICKLATVNRAFHRASSADFLWESKLPPSYKFLAKKVIGEENIATMTKKEIYAKLCLPNRFDGATKEVWLDKCSGQVCLFMSSKSLKITGIEDRRYWNYIPTEESRFNSVAYLQQMWWVEVVGELEFEFPVGRYSLVFRLQLGKASKRLGRRVCNADQVHGWDIKPVRFQLSTSDGQRSLSECYLSRPGEWVYYHVGDFVIEKPNELINIKFSLAQIDCTHTKGGLCVDSAIICPKEFRERLKQR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02289 289 ProSiteProfiles F-box domain profile. 23 69 IPR001810 GO:0005515
Cca02g02289 289 PANTHER F-BOX PROTEIN 1 288 - -
Cca02g02289 289 SUPERFAMILY F-box domain 21 79 IPR036047 GO:0005515
Cca02g02289 289 PANTHER F-BOX PROTEIN PP2-A15 1 288 - -
Cca02g02289 289 Pfam Phloem protein 2 121 279 IPR025886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02289 Cca-Chr2 43450660 43455250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02289 - - gmx:100795463 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02289 02 43450660 43455250 Cca08g00603 08 10586440 10589330 ECH
Cca02g02289 02 43450660 43455250 Cca02g02289 02 43450660 43455250 ECH
Cca08g00603 08 10586440 10589330 Cca02g02289 02 43450660 43455250 PCT