Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00561 ATGGCTCACGCTACCTCTTCAGGACAATCCAATGATATCAATAATGAAGACGGCAAGGAAACAAGTTCACTAGTTGTTTGTTTTGGGGAAATGTTAATAGACTTTGTTCCAACTGTGGGAGGAGTGTCACTGGCTGACGCACCCGCTTTCAAGAAAGCTCCTGGCGGAGCTCCTGCCAACGTGGCTGTCGGTATCTCTAGACTGGGAGGTTCATCTGCTTTTATTGGCAAGGTTGGAGCAGATGAATTTGGGTACATGTTAGCTGACATTTTGAAGCAGAACAATGTTGAAACATCTGGCATGCGGTTTGACACTAATGCAAGAACTGCATTAGCTTTTGTTACCCTTAGAGCTGATGGTGAACGCGAGTTCTTGTTTTTCCGCAATCCAAGTGCTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAAATATCTTAAAACAGGCTAGAATATTTCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGTCAGCTCACCTTGCTGCTATGAGCATTGCCAAAAAATCTGGTTGCATTCTCTCTTATGATCCAAATTTGAGATTGGCTCTATGGCCTTCAGAAGATGCTGCTCGAAAAGGCATCATGGATATATGGGATCAAGCTGATGTCATAAAGATAAGTGAGGATGAGATTACATTTTTGACTGGTGGAGATGATCCTCATGATGATAATGTTGTTTTGAATAAACTTTTTCATTCAAATCTCAAGCTTTTAATCGTTACTGAAGGGTCAAAAGGTTGCAGATATTACACCAAGGAATTTAAGGGCAGGGTTGCAGGTGTCAAAGTTAAACCTGTAGACACAACTGGTGCTGGAGATGCATTTGTTAGTGGGATTTTATACCGCATAGCTTCTGACCAAACTATTTTTCAGAATGAGAAACTTCTCCGAAAGGCTTTATATTTTGCTAATATGTGCGGTGCCATCACTGTAACTGAGAGAGGTGCAATTCCTGCACTACCTACAAAGGAAGCTATCTTGGAATTCTTAATAGAAGCAGCTGTAATATAA 1038 0.4114 MAHATSSGQSNDINNEDGKETSSLVVCFGEMLIDFVPTVGGVSLADAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGADEFGYMLADILKQNNVETSGMRFDTNARTALAFVTLRADGEREFLFFRNPSADMLLQESELDKNILKQARIFHYGSISLIDEPCKSAHLAAMSIAKKSGCILSYDPNLRLALWPSEDAARKGIMDIWDQADVIKISEDEITFLTGGDDPHDDNVVLNKLFHSNLKLLIVTEGSKGCRYYTKEFKGRVAGVKVKPVDTTGAGDAFVSGILYRIASDQTIFQNEKLLRKALYFANMCGAITVTERGAIPALPTKEAILEFLIEAAVI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00561 345 Gene3D - 21 343 IPR029056 -
Cca08g00561 345 CDD bac_FRK 24 326 - -
Cca08g00561 345 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 55 79 IPR002173 GO:0016773
Cca08g00561 345 PANTHER HEXOKINASE FAMILY MEMBER 16 341 - -
Cca08g00561 345 PRINTS Ribokinase signature 50 69 IPR002139 GO:0016301
Cca08g00561 345 PRINTS Ribokinase signature 205 220 IPR002139 GO:0016301
Cca08g00561 345 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Cca08g00561 345 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 276 289 IPR002173 GO:0016773
Cca08g00561 345 PANTHER FRUCTOKINASE-7-RELATED 16 341 - -
Cca08g00561 345 Pfam pfkB family carbohydrate kinase 24 331 IPR011611 -
Cca08g00561 345 SUPERFAMILY Ribokinase-like 25 339 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00561 Cca-Chr8 9350483 9354765 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00561 K00847 - gmx:100778752 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02307 02 43755791 43759233 Cca08g00561 08 9350483 9354765 ECH
Cca08g00561 08 9350483 9354765 Cca08g00561 08 9350483 9354765 ECH
Cca08g00561 08 9350483 9354765 Cca02g02307 02 43755791 43759233 PCT