Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02307 ATGGCCCAGTTTACCTCCTCAGGTAAATCAGATGACCTCACAAAAGAAAACGGCAAGGAAAAAAGCCCACTCGTTGTTTGTTTTGGTGAAATGTTGATAGATTTTGTGCCAACAGTGGGTGGAGTGTCACTATGTGAAGCACCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCCAATGTGGCTGTTGGCATCTCTAGGCTTGGTGGTTCATCAGCTTTCATAGGCAAGGTTGGAGCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAGAACAATGTTGAGACATCTGGCGTGAAGTTTGACCCCAATGCAAGAACCGCATTAGCTTTTGTTACGCTTAGAGCTGATGGCGAGCGTGAGTTCTTGTTTTTCCGGAATCCTAGTGCTGATATGCTTCTTCAAGAGTCAGAGCTTGATAAAAATCTCATAAAGAAGGCTAAAATATTCCATTATGGTTCCATCAGCTTGATTGATGAGCCGTGCAAGACGGCTCATCTTGCTGCTTTGAGAATTGCTAAAGAATCTGGTTGCATTCTTTCATATGATCCAAATTTGAGATTGGCACTCTGGCCATCAGCTGAGGCTGCAAGGGAAGGCATAAGGAGTATATGGGATCAAGCCGATGTCATAAAGATAAGTGAGGAAGAGATTACATTTTtgactggtggtgatgatccttatgatgatgatgttgTATTAAAGAAGCTTTTTCACCCTAATCTCAAGCTTTTAATTGTTACTGAAGGGTCAGAAGGTTGTAGATATTACACCAAGGAGTTTAGGGGTAGGGTTGCTGGTGTTAAAGTTAATTCTGTTGACACAACTGGCGCTGGTGATGCATTTGTTAGTGGGATTATCTATAGCTTAGCTTCTGACCAAAGTCTTTTCCAGAATGAGGAGCGTCTACGAAAAGCTCTATATTTTGCCAATGTATGTGGTGCCATAACGGTAACAGAGAGAGGAGCAATTCCTGCACTACCTACAAAAGAAGCTGTTCTGCAATTCAGCCAAAACTGA 1026 0.4094 MAQFTSSGKSDDLTKENGKEKSPLVVCFGEMLIDFVPTVGGVSLCEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGADEFGYMLADILKQNNVETSGVKFDPNARTALAFVTLRADGEREFLFFRNPSADMLLQESELDKNLIKKAKIFHYGSISLIDEPCKTAHLAALRIAKESGCILSYDPNLRLALWPSAEAAREGIRSIWDQADVIKISEEEITFLTGGDDPYDDDVVLKKLFHPNLKLLIVTEGSEGCRYYTKEFRGRVAGVKVNSVDTTGAGDAFVSGIIYSLASDQSLFQNEERLRKALYFANVCGAITVTERGAIPALPTKEAVLQFSQN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02307 341 PANTHER FRUCTOKINASE-7-RELATED 17 340 - -
Cca02g02307 341 CDD bac_FRK 24 326 - -
Cca02g02307 341 Pfam pfkB family carbohydrate kinase 24 331 IPR011611 -
Cca02g02307 341 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 55 79 IPR002173 GO:0016773
Cca02g02307 341 Gene3D - 21 341 IPR029056 -
Cca02g02307 341 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 276 289 IPR002173 GO:0016773
Cca02g02307 341 PRINTS Ribokinase signature 50 69 IPR002139 GO:0016301
Cca02g02307 341 PRINTS Ribokinase signature 205 220 IPR002139 GO:0016301
Cca02g02307 341 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Cca02g02307 341 PANTHER HEXOKINASE FAMILY MEMBER 17 340 - -
Cca02g02307 341 SUPERFAMILY Ribokinase-like 25 338 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02307 Cca-Chr2 43755791 43759233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02307 K00847 - gmx:100818404 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02307 02 43755791 43759233 Cca08g00561 08 9350483 9354765 ECH
Cca02g02307 02 43755791 43759233 Cca02g02307 02 43755791 43759233 ECH
Cca08g00561 08 9350483 9354765 Cca02g02307 02 43755791 43759233 PCT