Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00524 ATGGCCCTCGAGACCTGGCTCATCAGAGTGAAAACGGCCTTGTCGCAGAGGAAACCCTTGTTCTCTTCGTCGAAGCCGAAACGCGTGGCCGTTTTGTCGTTCGAGATCGCGAACGTGATGTCGAAGCTCCTCCACCTATGGCAGTCCCTCTCCGACGCCAGCGTCGTTCGCCTCCGAAACGACGCCGTCGCGCTCGAGGGCGTGCGGAAGCTCATTTCGAACGACGAGTCGTTCCTTCTCAGCCTCGCCGTGGCCGAGTTCGCCGACTCGCTCCGACTCGTCGCCGACTCGGTCTCCCGACTCAGCGAAAACTGCCACGACCCCTCCCTCCGATCCTTCCACCGAGTCTTCACCGAGTTCGCCAACTCGGGCCTCGACCCGCATAGTTGGACCCTCGCAACCCCCAAAGACATCGAAACCAAACACCGAAAGTTGCAACATTACGTGACTCTCACGGCAACGCTCCACAAAGAAATCGACGCGCTCACGCTCCTCGAAAGCGCGTTCAAAAAAGCACTTCTCAGCAACACTGACACGAAAAAACTCCACGACCTTCAGCAGAAGATCTTCTGGCAGAAGCAAGAGGTGAAGAATCTAAAAGAAAGATCCCTTTGGAACAAAAGCTTCGATTCCGTTGTTTTATTGCTAGCAAGGTTCGTTTTTGCCGTTTTAGCGAGGATTAAGGTTGTCTTCGGAATCGGACACAGTAGTGTCCCCTTTTTGTCGCGTAGTTTGTCTTCCGTTTATCCCTCCGATCATCAAAACCCTATTTCCAATTCTTGCTCCTCCGTTTCCGGGCCGTTGAAAAGATCCAAACTTGGGGAGGAAAATGAAGATTTGGGAAGTGGATTCTTTGagtcaaattgcaaggtgttaaagttgaagaaagatggtgaaggtgaaggtgaaagtgagagtTTGGGTGCTTCAGGTTTGGCTTTGCACTATGCGAACTTGGTGATGGTGTTGGAGAAGATGATAAAGTCACCCCAGTTGGTAGGGTTGGATGCAAGGGATGATTTGTATGGGATGTTGCCAAGTAGCATAAGGGCATGTTTGAGGGGAAGGTTGAGAGGGGTGGGGTTGTCTGCATGTGATGATCATGTGTTGGCTGGGGAGTGGAGGGAAGCATTGGGGAGGATTTTGGGGTGGTTGGGACCTTTGGCACATAACATGATCAAGTGGCAGAGTGAGAGGAGCTATGAGCAGCAGAATAGTTTGGTGCCAAAGACCAATGTGTTGTTGTTGCAGACTTTGTTCTTTGCTAACAAGGAGAAGACAGAAGCTGCCATCACTGAGCTGCTTGTGGGGTTGAACTATGTTTGGAGATTTGAGAGGGAAATGACAGCTAAGGCATTGTTTGAATGTACCAAATTTAATGGCTTGTTAAGCTTGCACAAACCCAGTTAA 1410 0.4872 MALETWLIRVKTALSQRKPLFSSSKPKRVAVLSFEIANVMSKLLHLWQSLSDASVVRLRNDAVALEGVRKLISNDESFLLSLAVAEFADSLRLVADSVSRLSENCHDPSLRSFHRVFTEFANSGLDPHSWTLATPKDIETKHRKLQHYVTLTATLHKEIDALTLLESAFKKALLSNTDTKKLHDLQQKIFWQKQEVKNLKERSLWNKSFDSVVLLLARFVFAVLARIKVVFGIGHSSVPFLSRSLSSVYPSDHQNPISNSCSSVSGPLKRSKLGEENEDLGSGFFESNCKVLKLKKDGEGEGESESLGASGLALHYANLVMVLEKMIKSPQLVGLDARDDLYGMLPSSIRACLRGRLRGVGLSACDDHVLAGEWREALGRILGWLGPLAHNMIKWQSERSYEQQNSLVPKTNVLLLQTLFFANKEKTEAAITELLVGLNYVWRFEREMTAKALFECTKFNGLLSLHKPS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00524 469 PANTHER BNAC09G50660D PROTEIN 1 468 - -
Cca08g00524 469 Pfam Domain of unknown function (DUF3475) 31 86 IPR021864 GO:0045927
Cca08g00524 469 Coils Coil 182 202 - -
Cca08g00524 469 PANTHER DUF3475 DOMAIN PROTEIN 1 468 - -
Cca08g00524 469 Pfam Protein of unknown function (DUF668) 307 394 IPR007700 GO:0045927
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00524 Cca-Chr8 8531525 8533996 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00524 - - gmx:100801628 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00524 08 8531525 8533996 Cca08g00524 08 8531525 8533996 ECH
Cca08g00524 08 8531525 8533996 Cca02g01708 02 36043695 36045601 PCT