Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01708 ATGGCCCTCGAAACGCTTTTCGTCAAGGTCAAAACCGCTTTATCAAACAGCTTCGACTCGGTCCCTCCGAAGCTTCTCAAGAAGAAACCCTCCTTCAAGGCCAAACCAAACGTCGGCGTTTTGGCCTTCGAAATCGCCGGCGTCATGTCCAAGCTCCTCCACCTCTGGCACTCGCTCTCCGACGCCACCATCGTCCGCATCCGCAACGACGCTGTCAACCTCGAGGGCGTGCGGAAGATCATCTCCAACGACGAGTCCTTCCTCCTCGGGCTCGCCTGCGCCGAGTTCGCCGAGTCGCTCCGAGTCGTTGCCAACTCGGTGACTCGGCTCAGCGCTCGCTGCGAGGACCCCGCCCTGCGGGCCTTCCACCGGGCCTTTCTCGAGTTCGCAGACTCGGGCCGCGACCCGAACGGGTGGGCCCTCTCGGGCCCAAAGGAAACCGAGTCTAAGCTGAAGAAAATGGAGCGTTACGTGACGCTCACGGCAACGCTCTACCGCGAAATGGAGGACCTCACGGTGATGGAAACAACCTTCCGAAAAGCGTTGAACCACGCCGACGGCAACGTCGGGAGCAAAGACCAGCAGAAACTGTACGAGCTTCAGCAGAAAATCTTTTGGCAGAAACAAGAAGTGAAGGATCTAAAGGAGAGATCTTTGTGGAGTAGAAGCTTCGACAGCGTTGTTATCTTACTCGTGAGGTTCAGTTTCACTGTTTTAGCAAGGATTAAGGTTGTCTTCGGAATTGGGCATTGTGTTCCTTCTTTGTCTCGCACGTTGTCAGCTTCAGCCACTGTTTATCCATCTGACCAAAACCCTAATTTGGAAGAAAGTTCGAAGCTTGACGGGGATAAGAAAGAGGGTGATTTGGATTTGGGATTGGGGAGTGGGTTTTTTGAGAGCAACTCAAAGCTGTTGAAGGCACCGGAGAGTACTTTGGGTGCTGCAGGGTTGGCTTTGCACTATGGGAATTTGATCATAGTGATGGAGAAGATGATAAAGTCGCCACATTTGGTTGGGGTGGATGCAAGGGATGACTTGTATGGGATGTTGCCGAGGAGCATAAGGTGGGGTTTGAGGGGGAGGTTGAGAGGGGTGGGGTTTTGTGCGAGTGATCCTGTGCTTGCTGGGGAATGGAGAGAGGCGTTGGGGAGGATATTGGGGTGGTTGTCACCCTTGGCTCATAACATGATCAAGTGGCAGAGTGAGAGGAGCTTTGAGCAGCACAACTTGGTGCCCAAGACCAATGTGTTGCTGTTGCAGACTTTGTTCTTTGCAAATAAGGACAAGACTGAGGCTGCCATCACTGAGTTGCTCGTGGGGTTGAACTATATTTGGAGGTTTGAGAGGGAGATGACTGCTAAGGCTTTCTTTGAATGCGCCAATTCTCATGGGTTGTTGTTAAATTTGCACAAACCCACTTAA 1422 0.526 MALETLFVKVKTALSNSFDSVPPKLLKKKPSFKAKPNVGVLAFEIAGVMSKLLHLWHSLSDATIVRIRNDAVNLEGVRKIISNDESFLLGLACAEFAESLRVVANSVTRLSARCEDPALRAFHRAFLEFADSGRDPNGWALSGPKETESKLKKMERYVTLTATLYREMEDLTVMETTFRKALNHADGNVGSKDQQKLYELQQKIFWQKQEVKDLKERSLWSRSFDSVVILLVRFSFTVLARIKVVFGIGHCVPSLSRTLSASATVYPSDQNPNLEESSKLDGDKKEGDLDLGLGSGFFESNSKLLKAPESTLGAAGLALHYGNLIIVMEKMIKSPHLVGVDARDDLYGMLPRSIRWGLRGRLRGVGFCASDPVLAGEWREALGRILGWLSPLAHNMIKWQSERSFEQHNLVPKTNVLLLQTLFFANKDKTEAAITELLVGLNYIWRFEREMTAKAFFECANSHGLLLNLHKPT 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01708 473 Pfam Domain of unknown function (DUF3475) 40 95 IPR021864 GO:0045927
Cca02g01708 473 PANTHER BNAC09G50660D PROTEIN 1 461 - -
Cca02g01708 473 Pfam Protein of unknown function (DUF668) 311 398 IPR007700 GO:0045927
Cca02g01708 473 PANTHER SIMILARITY TO UNKNOWN PROTEIN 1 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01708 Cca-Chr2 36043695 36045601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01708 - - gmx:100787581 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01708 02 36043695 36045601 Cca02g01708 02 36043695 36045601 ECH
Cca08g00524 08 8531525 8533996 Cca02g01708 02 36043695 36045601 PCT