Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00520 ATGTCTAAACCTCAAATGGATCCGCTTTTGCAAACTGAAACATGTGTATCACTTCTTGATGAACTTCAGATAATATGGAATGAAGTTGGGGAGTCTCAGACTGAAAAAGATAGAATGTTGTTTGAGCTTGATCAAGAGTGTCTAGAAGTATACAGAAGAAAGGTAGATAAAGCAAATCGGTCTAGAGCTCAAATAAGGCAGGAAATTGCTGATTCTGAAGCCGAGCTTACATGTATCTGTTCAGCAATGGGAGAACGACCAGTACATGTTAGGCAGTTTGACCAAAAAGCTGTAACCTTGAGGGAAGAGCTAGCAAGAGTTCGCCCAGAGCTGGAGGAAATGCAAAAAAGGAAGTCTGATCGTAGAAATCAATTTGTAGAAGTTCAAGAACAGATTCAAAGTATCTCAAATGAGATTGATAATTCAAGAGAATATATTACAGCTGTTGTAGATGAAACTGACTTATCATTGAGAAAGCTTGAAGAATTGCACAGACAGCTTCTTGCTCTTCAAAAGGAGAAGAGTGAGCGTGTCAAGAAGGTTCAAGAGCACCTGTACACCTTAAATTCTCTTTGTTCAGTGCTTGGTTTGGACTTTAAGCAGACAGCCAGTGGAGTCCACCCTAGTTTAGGAAATTCAGAAGGACCTAATAATGTAGATAACAATACTATCAGTCAATTGGCTATTGCTATACAAGAATTGAGGACAATTAAATTACAGAGAATGCAGAGGCTCCAAGATCTAGCTTCATCAATGTTGGAGCTCTGGAATTTGATGGATACACCTATTGAAGAGCAACAGATGTTTCAGAATGTTACGTGTAATATAGCTGCTTCAGAACATGAAGTAACTGAACCAAACAGCTTGTCTGAGAACTTCATCAATTATGTTGAGGCAGAAGTATCTAGGTTAGAAGAGTTAAAATCAAGCAAAATGAAAGAGCTTGTTTTGAAGAAAAGAGCAGAGCTAGATGAGATTTGTCAAAAGACTCATTTGATTCCAGAAATTGATAGTGCAGTGGAATATACTGTTGAAGCTATAGAATTTGGATCTGTAGACCCTGCTTGTGTGCTTGAACAAATTGAACTTCAGGTTGCCCGAGTCAAAGAGGAAGCTTTTGTTAGAAAAGAAATACTAGAAAAAGTTGAGAAATGGTTGTCAGCATGTGACGAAGAGTCTTGGCTTGAGGAGTACAACAGGGATGAAAATCGATATAATACTGGGAGAGGTATTCATCTTACTCTCAAGCGAGCGGAGAAAGCCCGTGCCTTGGTTAACAAACTTCCAGCAATGGTAGATGCTATAACTTCTAAAACTGTAGCATGGGAAAAGGACAATGGCATTGAGTTCACATATGATGGTAGCCGACTGCTCTCAATGCTTGAGGACTACACCCTATCACGGCAAGAGAAGGAGCAAGAACGTCGTAGGCAGCGGGACCTGAAGAAACTTCAGGGACAAATGATAGTGGAAAAGGAAGTACTCTATGGGTCAAAACCAAGCCCTTCAAAGGCCCAGAGTGCAAAAAAGACACCTAGGATGTCATCTGGAAGTGCAGCAAGTAGAAAAGTCTCCCTTGGATGTCAATCCCCAAGACCTGATTCAAAAGCTACTCAGTCATTCTCCACAAGGAAGACTGACAAATCACGATACCTGGATGATGATGGTTCATGTTTTTCAACAGATGATGATTCTCCACCGGATTCTCCCAAGTACTCTTGA 1722 0.4042 MSKPQMDPLLQTETCVSLLDELQIIWNEVGESQTEKDRMLFELDQECLEVYRRKVDKANRSRAQIRQEIADSEAELTCICSAMGERPVHVRQFDQKAVTLREELARVRPELEEMQKRKSDRRNQFVEVQEQIQSISNEIDNSREYITAVVDETDLSLRKLEELHRQLLALQKEKSERVKKVQEHLYTLNSLCSVLGLDFKQTASGVHPSLGNSEGPNNVDNNTISQLAIAIQELRTIKLQRMQRLQDLASSMLELWNLMDTPIEEQQMFQNVTCNIAASEHEVTEPNSLSENFINYVEAEVSRLEELKSSKMKELVLKKRAELDEICQKTHLIPEIDSAVEYTVEAIEFGSVDPACVLEQIELQVARVKEEAFVRKEILEKVEKWLSACDEESWLEEYNRDENRYNTGRGIHLTLKRAEKARALVNKLPAMVDAITSKTVAWEKDNGIEFTYDGSRLLSMLEDYTLSRQEKEQERRRQRDLKKLQGQMIVEKEVLYGSKPSPSKAQSAKKTPRMSSGSAASRKVSLGCQSPRPDSKATQSFSTRKTDKSRYLDDDGSCFSTDDDSPPDSPKYS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00520 573 Gene3D - 364 498 - -
Cca08g00520 573 Coils Coil 461 481 - -
Cca08g00520 573 Coils Coil 157 180 - -
Cca08g00520 573 Coils Coil 48 75 - -
Cca08g00520 573 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 7 541 IPR007145 GO:0000226|GO:0008017
Cca08g00520 573 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 514 - -
Cca08g00520 573 MobiDBLite consensus disorder prediction 500 525 - -
Cca08g00520 573 MobiDBLite consensus disorder prediction 541 557 - -
Cca08g00520 573 Coils Coil 111 131 - -
Cca08g00520 573 MobiDBLite consensus disorder prediction 493 573 - -
Cca08g00520 573 PANTHER 65-KDA MICROTUBULE-ASSOCIATED-LIKE PROTEIN 7 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00520 Cca-Chr8 8437270 8444400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00520 1 543 EF-hand Containing Proteins AT5G62250 54.219 2.29e-180 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00520 K16732 - gmx:100777734 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01705 02 36014691 36020380 Cca08g00520 08 8437270 8444400 ECH
Cca08g00520 08 8437270 8444400 Cca08g00520 08 8437270 8444400 ECH
Cca08g00520 08 8437270 8444400 Cca02g01705 02 36014691 36020380 PCT