Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00514 ATGATCGAGTACTCCCACCCCCTCACTCTCTCCGGCGGCAAAGACGACTTCTCCGCTCTCGCAATGTTCCAAGACAGTGTCAAAAAACTCAAAAGCCCCAAAACTTCTCCTGGCCCTGCTTTGTCCAAGGACCAGGTCAATTCCGCTTTCCACCTTCTTTTCGATTGGTTCTATGACTCCTTCGGCTCTGTCTCTCTCTCCGCCCTCCACCACCCCAAGTTTCAAGCTTTTCTCACCCAGGTTGGTTTGCCCACTCACTTGCGAAGGGAGCTTTCTGGGCCCAGGCTTCATTCTAGGTTCGGGGAGGCCAAGGCTGACTCCGAGGCTAGGATAAGGGATGCCATGTTTTTCCAGCTCGCCAGTGATGGATGGAAGAAtgctgctgctgctgctgcggctgcGACTCATTGCTTTCCTCTCTGTTGTGCTGAAGGAGAGGGTTTTGTCAAGTTTCTTGTTAATCTCCCCAATGGGACTAGTGTTTTTCAGAAGGCTTTCTTCACCGGGGGTGTCGACAATTCCAAGTATGCTGAGGAGGTTTTGTGGGAGACCGTTACGGCGGTTACGGGAACTGGGGTGCAACGCTGTGTGGGGATTGTGGCGGATAAGTTTAAGGCCAAGGCGTTGAGGAATTTGGAGGTGCAGCACCATTGGATGGTCAACACCTCTTGCCAGGTTCAGGGGTTCGCTAGTTTGATCAAGGATTTTAGCCGCCAGTTGCCCCTTTTCCGCTCTGTTGTGGAGGGCTGTTTGAAGGTGGGGAGGTTTGTGGATGGCGAGTGTCGTGTGAGGAGCGTGTTTCTCAAGTGCAGGGCGCAGGAGATGGACTGTGGTGGCGGCCTGATTCGCGTGCCTTCGCCCAAATGTGACCCTTTGAGGAACTTCCATGTGGTGTTACCATTGCTGGAGGATGTTTTGAGCTGTGCTAGGGTGATGCAGATGGTGGTGATGGAGGATGTGTTCAAGGTGGTGTGTATGGAGGATCCTTTGGCCAGGGAGGTCGCGGGGATGGTGCAGAGTGAGGGGTTTTGGAATGAGTTGGAGGCGGTTTATTCGCTTGTGAAGCTTGTTAGGGGGATGGTGCAGGATGTTGAGGCCGAGAGGCCGTTGATCGGCCGGTGTTTGCCTCTTTGGGAGGAGTTGAGGGGCAAGGTGAAGGAGTGGTGTGGGAAGTACAACATTGTGGAAGGACCTGTGGAGAAGATAGTGGACAAGAGGTTTAGGAAGAATTACCACCCCGCGTGGGCGGCGGCGTTTATACTTGATCCGCTTTACTTGATCAAGGATGCGAGTGGCAAGTATCTTCCACCGTTCAAGTGTTTGACAAGAGAACAGGAGAAGGATGTGGATAAGTTACTGACAAGGCTGGCTACGCGGGAAGAGGCTCATGTTGTGTTGATGGAGCTCATGAAGTGGAGGTCGGAGGGGCTTGATCCGCTTTATGCACAGGCTGTTCAGATGAAGCAAAGGGATCCGGTAACCGGGAAGATGAAGGTTGCCAATCCGTTGAGCAGTAGACTTGTGTGGGAAACTTGTTTGAGTGAGTTTAAATCCCTGGGGAAGATTGCAGTGAGGCTCATTTTTCTTCATGCGACTTCATGTGGGTTTAAGAGTAATTGGTCTTTTATGAGGAAAATTTCAGCTAATAAGCAGTCAAGAGTTGCCTTGGAGAGGGCTCAGAAAATGATATATATTGCAGCTCATGCAAAGCTTGAAAGGAGAGACTTCTCTAGTGAGGAAGAAAAGGATGCAGAGCTGTTTGCCATGTCTGGTAGTGAGGATGGCATGCTGGCTGAGGTCTATGCTGATGCTCCATTAGTAATTGGAATGGCTTGA 1836 0.5049 MIEYSHPLTLSGGKDDFSALAMFQDSVKKLKSPKTSPGPALSKDQVNSAFHLLFDWFYDSFGSVSLSALHHPKFQAFLTQVGLPTHLRRELSGPRLHSRFGEAKADSEARIRDAMFFQLASDGWKNAAAAAAAATHCFPLCCAEGEGFVKFLVNLPNGTSVFQKAFFTGGVDNSKYAEEVLWETVTAVTGTGVQRCVGIVADKFKAKALRNLEVQHHWMVNTSCQVQGFASLIKDFSRQLPLFRSVVEGCLKVGRFVDGECRVRSVFLKCRAQEMDCGGGLIRVPSPKCDPLRNFHVVLPLLEDVLSCARVMQMVVMEDVFKVVCMEDPLAREVAGMVQSEGFWNELEAVYSLVKLVRGMVQDVEAERPLIGRCLPLWEELRGKVKEWCGKYNIVEGPVEKIVDKRFRKNYHPAWAAAFILDPLYLIKDASGKYLPPFKCLTREQEKDVDKLLTRLATREEAHVVLMELMKWRSEGLDPLYAQAVQMKQRDPVTGKMKVANPLSSRLVWETCLSEFKSLGKIAVRLIFLHATSCGFKSNWSFMRKISANKQSRVALERAQKMIYIAAHAKLERRDFSSEEEKDAELFAMSGSEDGMLAEVYADAPLVIGMA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00514 611 PANTHER PUTATIVE ISOFORM 1-RELATED 12 603 - -
Cca08g00514 611 SUPERFAMILY Ribonuclease H-like 190 572 IPR012337 -
Cca08g00514 611 PANTHER OSJNBA0013A04.12 PROTEIN 12 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00514 Cca-Chr8 8293900 8297594 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00514 - - ccaj:109808227 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01701 02 35976137 35980793 Cca08g00514 08 8293900 8297594 ECH
Cca08g00514 08 8293900 8297594 Cca08g00514 08 8293900 8297594 ECH
Cca08g00514 08 8293900 8297594 Cca02g01701 02 35976137 35980793 PCT