Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00511 ATGGGTTGCTGGTCTGCAGAAAATGCCACAAAAGCCTTTCTCAACACATTGAAACTGGGTCAAAAGGCCAAAGAGCCAGCTGTTGCAGAATTCATATCAGCACTGGCAGCTGGCAACAATGCACAACAAATGGTTATGGCATGTGCTGGTGCAGCAGACTCCACCACACTAGCATTGGTCACTGCTGCACACCAAATTGGTGGCCATGTTTGTTGCATTGTCCCTAGCCATGAATACTTAAGTGCCTCAAAAAATGCCCTTGGAGTCAATGCTAGCCAAGTCCAATTCATAGTTGGAGAGGCTCAACAAGAGCTAGTGCTGTTAAGCCAAGCAGATTTTGTGCTAATTGATTGCAACCTTGTGAGCCATGGAGAGATTGTTGGAGCAATCCAATGTGGTGGCATGAAAAATGGCGCAATTGTTGTTGGTTACAATGCACTTAGCTCTAAAGGGGCTTGGTGGTCTTGTGGATCAAAGACTCAGTTGTTGCCTATAGGAAAAGGGCTTCTTGTGACAAGATTTGGAGCAATTGGTACTAGTCCAAAATGTGGATCTGGCATGAGTAAGACCAGAAGTAGTCGTTGGATTGTTAAGGTGGATAAATGCACTGGTGAAGAACATGTGTATAGGATTAGAGTTCCATAA 645 0.4465 MGCWSAENATKAFLNTLKLGQKAKEPAVAEFISALAAGNNAQQMVMACAGAADSTTLALVTAAHQIGGHVCCIVPSHEYLSASKNALGVNASQVQFIVGEAQQELVLLSQADFVLIDCNLVSHGEIVGAIQCGGMKNGAIVVGYNALSSKGAWWSCGSKTQLLPIGKGLLVTRFGAIGTSPKCGSGMSKTRSSRWIVKVDKCTGEEHVYRIRVP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00511 214 Gene3D Vaccinia Virus protein VP39 6 173 IPR029063 -
Cca08g00511 214 PANTHER BNAA09G06020D PROTEIN 1 214 - -
Cca08g00511 214 Pfam Protein of unknown function (DUF1442) 4 210 IPR009902 -
Cca08g00511 214 PANTHER DUF1442 FAMILY PROTEIN 1 214 IPR009902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00511 Cca-Chr8 8246343 8247759 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00511 - - gmx:100805528 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00511 08 8246343 8247759 Cca08g00511 08 8246343 8247759 ECH
Cca08g00511 08 8246343 8247759 Cca02g01699 02 35948158 35949248 PCT