Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00507 ATGCAGTATTACTTTATGCAATGTGGATGCACTGATCCAATATGTTTGAAGACAGATAGCTTTGAAGTTTACATTAGCGAGAAATTGGGCATTAAAATCGAGAGGAACCCTCCCGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAAATGGGGTTGCCCTCCAAGCAAATTCCCATGGACATATGAGTCTAAAGAGACATGCTATCTCTTGGAAGGAAAAGTGAAGGTTACCCCAAGTGGGGCAAACGAATCAGTAGAAATTGCTGCTGCGACGGGTTCTGAGTGA 294 0.4422 MQYYFMQCGCTDPICLKTDSFEVYISEKLGIKIERNPPEDKLTQLGVRQWPKWGCPPSKFPWTYESKETCYLLEGKVKVTPSGANESVEIAAATGSE 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00507 97 PANTHER OS04G0445200 PROTEIN 22 92 - -
Cca08g00507 97 Gene3D Jelly Rolls 19 95 IPR014710 -
Cca08g00507 97 PANTHER OS04G0445200 PROTEIN 22 92 - -
Cca08g00507 97 SUPERFAMILY RmlC-like cupins 40 84 IPR011051 -
Cca08g00507 97 Pfam EutQ-like cupin domain 43 89 IPR008579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00507 Cca-Chr8 8179633 8186286 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00507 K06995 - gmx:100527331 146.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00507 08 8179633 8186286 Cca02g01693 02 35888860 35890029 PCT