Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00504 ATGTCGCGAATCTTTGGTAGATGGACGAAGGCGAAGGAAATGGCGGCGCTTCCGAGGTGTCTGCCACGTGGGCACCGCTCAACCGGGTTCAATTCGTGTCCGGTCACGACCCACCGGAGCATGGTCGCCGGCCACCGCCGGCGCGACGCTCCGGTGGGGCTGCAGGAGCGGTACAAGTGGGATCGCGGCGGGTCGGACGACAACCCGACCCGGAAGATCCTGGCCGAGGCTAATTGCCCACGTTGCACCAAAGACATGAACCTTATTTTCTCCAATCGCCACTTTACCATCCCACCAAGTGAGTCTAGTTCTGAATTGGGTGGTGGGGGAGAAAAAGAAAAGGGTTACCAAGCAGTGAATCGTTGCCCAACTTGCAAAACTGCTTATTACTTTCGCCCGTTTGACACTGCACCTCTGCAAGGTACCTTTGTGGAGATTGGTAGGGTCAGTAGTACTAACAATAATGGTGTTAATAATGTGAGTGGTAAGGGGCAATCTCCTAGGAGGATCACACATGGGAAGGGCAAAGAGGGTGGTAGTAGTAGTAGTAAGAGTGGTCAAGGGGGAGAGGAATTTGGGCCTAAGAGTAATAGTAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGTCCTACAATGGTGGTGGTGGTAATGGTAATGGTGATCATGGCGAGCCACCTGAGTCGTGGCCGCCGGGTGGTAGTAATGGGAATGGGAATGGTTTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGGATTAATGTTTTCCGGGCTACGGGGCCACGGAATGGTGGTTCAGGTGGTGGAGGGGGGGGCGATGGTGAGAAGACCGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCCTCACCAAAAGAGATCTGTAAGGGTCTTGACAAGTTTGTCATTGGTCAAGAGAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAACCATTATAAAAGGATATACCATGCCACTTTACAGAAAGGGCCAGTGCCGTCAGGCGCAGATTCAGGAGCTTCAGAAGTGTTAGATGATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCCTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTTCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCAAGTATGAATTCATTTGCCGGTTATGTTGGAGAAGACGTTGAATCAATACTGTATAAACTACTTGCGGCAGCAGATTTCAATGTTGCGGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGCAGGCATTATTGAAAATGCTTGAAGGAACTATTGTAAATGTCCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAACATTCAGATCGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTTCCAATATGAGAAATGGTGGAATAACAGATTCTGCAGTAACATCCTCTTTACTGGAATCAGTAGAAAGTGCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCAGCTTGTCAGCTTTAACTGAAGATCAACTTATGATGGTTCTCACAGAACCAAAAAATGCTCTTGGTAAGCAGTACAAGAAATTATTTAGCATGAATAATGTTAAGTTGCACTACACAGAGAATGCTCTAAGACTGATAGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGAGGATTGAGAGCCTTACTGGAAAACATTTTAACCGAAGCCATGTATGAGATTCCTGATATTAAGACAGGAAGCGACCGAGTAGATGCAGTTGTTGTTGATGAAGAGTCAGTAGGGTCGCTAACTTCCCCCGGATGTGGAGGGAAAATCCTTCGCGGAGATGGTGCATTGGAGCAGTTCCTAGCTAAGATCAAGGATTCGGCGAGTGTTGACGTAGCTGAATCAGATTTACAAGAGGGGGATTCAGAGCTTTCATCAAGAGCCATGAGCATCATAGCTACTGGTCTAAGTTCACTGGATaggaaagaaataatagaagagaaaagaaaGGTGTAG 2175 0.4602 MSRIFGRWTKAKEMAALPRCLPRGHRSTGFNSCPVTTHRSMVAGHRRRDAPVGLQERYKWDRGGSDDNPTRKILAEANCPRCTKDMNLIFSNRHFTIPPSESSSELGGGGEKEKGYQAVNRCPTCKTAYYFRPFDTAPLQGTFVEIGRVSSTNNNGVNNVSGKGQSPRRITHGKGKEGGSSSSKSGQGGEEFGPKSNSNASKWLEVSLWETLMSYNGGGGNGNGDHGEPPESWPPGGSNGNGNGLAVHTPPGPPFAPGINVFRATGPRNGGSGGGGGGDGEKTAWGGSNLGKDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHATLQKGPVPSGADSGASEVLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASMNSFAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRSNMRNGGITDSAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHYTENALRLIAKKAMAKNTGARGLRALLENILTEAMYEIPDIKTGSDRVDAVVVDEESVGSLTSPGCGGKILRGDGALEQFLAKIKDSASVDVAESDLQEGDSELSSRAMSIIATGLSSLDRKEIIEEKRKV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00504 724 Gene3D - 560 660 - -
Cca08g00504 724 MobiDBLite consensus disorder prediction 95 115 - -
Cca08g00504 724 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 42 703 - -
Cca08g00504 724 MobiDBLite consensus disorder prediction 149 166 - -
Cca08g00504 724 SMART AAA_5 360 508 IPR003593 -
Cca08g00504 724 SMART ClpB_D2_small_2 561 651 IPR019489 -
Cca08g00504 724 Gene3D - 288 559 IPR027417 -
Cca08g00504 724 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 42 703 - -
Cca08g00504 724 Pfam C-terminal, D2-small domain, of ClpB protein 561 630 IPR019489 -
Cca08g00504 724 Pfam AAA domain (Cdc48 subfamily) 360 554 IPR003959 GO:0005524|GO:0016887
Cca08g00504 724 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 291 652 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cca08g00504 724 MobiDBLite consensus disorder prediction 149 199 - -
Cca08g00504 724 MobiDBLite consensus disorder prediction 215 292 - -
Cca08g00504 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 646 IPR027417 -
Cca08g00504 724 CDD AAA 361 455 - -
Cca08g00504 724 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00504 Cca-Chr8 8156132 8168783 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00504 K03544 - gmx:100805340 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00504 08 8156132 8168783 Cca02g01691 02 35877282 35884260 PCT