Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01691 ATGTCTCGAATACTCTTCTCCGCATGGAACAAGAAGAAGCTGCAACTCAACTTATTAACACCAACTCTTTTTTCTTGTTCTTCACACACCCACTTCTCCAACGCTCACGGTGGCGGTGGCGCCAATAGAGGGCTTCTCCGGCCCACTTTGAGACTCTACAGTAGTAGCAGTGGGGAGCCTCCAGAGGATTGGCCGCCTACGCACACTCCTCCCACAGTCAATTTCATTCGGGCCTCTGGGCCCAGGGACGACGACAACACGGGTTGGGTCGGGGGGTCCAATTTGGGTAAGGATTTTCCAACTCCAAAGGAAATCTGCGAGGGTCTCAACAAGTTTGTTATTGGGCAAGAGAGGGCAAAGAAGGTGCTCTCAGTTGCTGTTTATAACCACTACAAAAGAATATACCACGCCTCTTTGCACAACGGGTCAGGGGCAGATGCATTGGATGACGAGGATAATGTGGAGCTAGAAAAGAGTAACGTTCTCTTGATGGGTCCAACGGGTTCAGGGAAGACATTACTTGCCAAAACACTAGCTCGTTTTGTCAATGTTCCGTTTGTCATTGCCGATGCAACTACACTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCATGCTGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTGAATATTAGCCGGGATGTTTCTGGTGAAGGTGTTCAGCAGGCACTATTAAAAATGCTTGAAGGAACTATAATAAATGTTCCCGAGAAAGGAGCAAGGAAGCATCCACGAGGTGATAACATACAGATTGACACAAAGAACATTCTTTTTATATGTGGGGGAGCATTTGTTGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAGTCCGTGCCAATATGAGAACTGGCGGAGTTACAAATGCTACAGTCACATCATCTTTACTTGAATCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATAGGACGATTTCCGATCTTAATTAGCTTGTCAGCTCTAACTGAAGACCAACTTATGCAGgtcctcacagaaccaaaaaatgctctggccaagcagtacaagaaattatttaacatgaataatGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATAGCAAAAAAGGCAATGGCAAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAAGCATTTTAACTGAAGCCATGTTTGAGATTCCAGATGTTAAAGTGGGAAATGAACTGATTGATGCAGTTGTTGTTGACGAGGAGTCAGTAGGATCAGTAAATGCCCCTGGGTGTGGAGGAAAAATTCTCTGTGGAAGTGGTGCTTTGGAGCTGTGCCTAGCCAAGATGGAGGGTTCGGAGGTTAACGGTGACGTAGCTGAACCAGACTTACAAGAGGGGGAATCGGAGATTTCATCAAGAGCCATGAGCATGTAA 1539 0.4327 MSRILFSAWNKKKLQLNLLTPTLFSCSSHTHFSNAHGGGGANRGLLRPTLRLYSSSSGEPPEDWPPTHTPPTVNFIRASGPRDDDNTGWVGGSNLGKDFPTPKEICEGLNKFVIGQERAKKVLSVAVYNHYKRIYHASLHNGSGADALDDEDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVHAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIINVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGVTNATVTSSLLESVESSDLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTEPKNALAKQYKKLFNMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDVKVGNELIDAVVVDEESVGSVNAPGCGGKILCGSGALELCLAKMEGSEVNGDVAEPDLQEGESEISSRAMSM 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01691 512 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 95 458 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cca02g01691 512 Pfam C-terminal, D2-small domain, of ClpB protein 368 437 IPR019489 -
Cca02g01691 512 SMART ClpB_D2_small_2 368 461 IPR019489 -
Cca02g01691 512 Pfam AAA domain (Cdc48 subfamily) 157 361 IPR003959 GO:0005524|GO:0016887
Cca02g01691 512 Gene3D - 93 366 IPR027417 -
Cca02g01691 512 SMART AAA_5 157 319 IPR003593 -
Cca02g01691 512 MobiDBLite consensus disorder prediction 492 512 - -
Cca02g01691 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 453 IPR027417 -
Cca02g01691 512 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Cca02g01691 512 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 82 512 - -
Cca02g01691 512 Gene3D - 367 467 - -
Cca02g01691 512 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 82 512 - -
Cca02g01691 512 CDD AAA 158 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01691 Cca-Chr2 35877282 35884260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01691 161 260 Miscellaneous Gene Families AT3G02450 36.634 1.78e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01691 K03544 - gmx:100818418 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01691 02 35877282 35884260 Cca02g01691 02 35877282 35884260 ECH
Cca08g00504 08 8156132 8168783 Cca02g01691 02 35877282 35884260 PCT