Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00500 ATGAGGCACTTATTACTAATAATACCACTGATCTTGCTTGTTCTTGCTGGTTTTCCATTCAAAGCAAAAGGGTCTCTGCTACCTTTTACAGATCGACCTAGTACTCTCTTGGCTGATCTGTGGTCTGATCGTTTCCCTGATCCATTTCGGGTGTTAGAGCAAGTCCCATTTGGGGTTGTCAAAGACGAGTCATTCATGGCTGTGTCACCTGCAAGAGTAGATTGGAAGGAGACACCAGAGGGACATGTTATAATGCTGGACGTGCCAGGAATGAAGAAAGATGAGATCAAGATAGAAGTGGAGGGGAATAGGGTGCTGAGAGTGAGCGGAGAAAGGAAGAAGGAGGAGGAGAAGGAAGGGGATCACTGGCATAGAGTGGAGAGATCCTGTGGCAAATTCTGGAGGCAGTTCAAGGTGCCAGATAATGTGGACTTGGATTCTGTCGAGGCTAAGCTGGAGAATGGAGTGCTTACTCTCACAATGAACAAGTTGTCACCTAATGAGATCAAAGGTCCAAGGGTGGTGAGCATTGTAGGGGATGATGAGCAGACTGCCAAGCTCAAGGGTAATAAGGGCAAGCAAGAGCTTTGA 591 0.4704 MRHLLLIIPLILLVLAGFPFKAKGSLLPFTDRPSTLLADLWSDRFPDPFRVLEQVPFGVVKDESFMAVSPARVDWKETPEGHVIMLDVPGMKKDEIKIEVEGNRVLRVSGERKKEEEKEGDHWHRVERSCGKFWRQFKVPDNVDLDSVEAKLENGVLTLTMNKLSPNEIKGPRVVSIVGDDEQTAKLKGNKGKQEL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00500 196 ProSiteProfiles CS domain profile. 68 175 IPR007052 -
Cca08g00500 196 SUPERFAMILY HSP20-like chaperones 63 173 IPR008978 -
Cca08g00500 196 Gene3D - 31 177 IPR008978 -
Cca08g00500 196 Pfam Hsp20/alpha crystallin family 74 177 IPR002068 -
Cca08g00500 196 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 64 180 IPR002068 -
Cca08g00500 196 PANTHER 22.0 KDA HEAT SHOCK PROTEIN 10 185 - -
Cca08g00500 196 CDD ACD_ScHsp26_like 72 163 - -
Cca08g00500 196 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 10 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00500 Cca-Chr8 8120654 8121680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00500 K13993 - gmx:547971 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00500 08 8120654 8121680 Cca02g01690 02 35872238 35876417 PCT