Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00286 ATGTCATTGCAATTGCCATTGACCcttttcttcttcttgtgcatcctcttcttcCCTTGCTACCTGTGCCACAACCCTGACTCAGACAGAACAATCACCCTTAAGCCTATTTTGCTAACCCCATCCAAGCCTACGACAACAATCCCTGCATTCCCTGAACAATCTGATGTTGCAGGGTGCCCTCTTACCCTCTCAGATGAATTCTTTGATGGGATCAAAAGTGCATGTGGTGGCACCAAAAGTGGTGGTGGTGATAACATGGAGCTCCACCACAGCAGGTGCTGCCCTGTGCTTGCAGCATGGTTGTATTCAGCATATTCTGCCACTGCACTAGGCCATGGGCATGCCACAGCAGCATATGACATGATGCCCTTGCTGCCAGATGACTCAGAAACCTGTGTGAATGAGCTGGGAAAAGCCTTGGAAGTGAGGGGAATTGAGCTGGCCAAGCCTAATGAGACTTGTGATGTGGTGTACTGCTTCTGTGGCATTAGGCTGCACCACTTGACATGCCCTGATGCATTTTCTGTTGGCCAAAGTGGGGAGCTTGTGGGGGATGCAAGTGTGAGAAGGTTGGAGAAGAGTTGCTTGAGTAGCACCACAAATGTCAATGGCTTACCAGGTCTTGGAGGCTGCTCTAAGTGCTTGAATAGCCTCTATTTGCTTAACAAGAAGACTTCAAATTCAAGCAAAGCAGAAGACAGGACCACCAAGATCCACAACAAAGCTTGTGAGATCATGGGCCTGACATGGCTTCTGGCTAAGAACAGAACAGCTTATATGCACACGGTTTCGGCAGTTCTTCGTGCATTGATGCTGAACACTGATGGCTCCTACCCTCAATCCTGCTCTCTAAACAGTGATGGAATGCCTTTAGCTGTGGATTCATCTGAAATCTCTGATCACTCTTCATCAACCGCCCTCCAACCACCCTCCTATGTTTCTTTGTGGTTACTTTGTTTGCTACTACTAAATGTGCATTTTGCAATGTTATCCTCTTAG 1002 0.4641 MSLQLPLTLFFFLCILFFPCYLCHNPDSDRTITLKPILLTPSKPTTTIPAFPEQSDVAGCPLTLSDEFFDGIKSACGGTKSGGGDNMELHHSRCCPVLAAWLYSAYSATALGHGHATAAYDMMPLLPDDSETCVNELGKALEVRGIELAKPNETCDVVYCFCGIRLHHLTCPDAFSVGQSGELVGDASVRRLEKSCLSSTTNVNGLPGLGGCSKCLNSLYLLNKKTSNSSKAEDRTTKIHNKACEIMGLTWLLAKNRTAYMHTVSAVLRALMLNTDGSYPQSCSLNSDGMPLAVDSSEISDHSSSTALQPPSYVSLWLLCLLLLNVHFAMLSS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00286 333 Pfam SPARK 58 231 IPR043891 -
Cca08g00286 333 PANTHER GPI-ANCHORED PROTEIN 9 331 IPR040376 -
Cca08g00286 333 PANTHER PROTEIN, PUTATIVE-RELATED 9 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00286 Cca-Chr8 4137863 4140498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00286 - - gmx:100814208 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00286 08 4137863 4140498 Cca08g00286 08 4137863 4140498 ECH
Cca09g02812 09 53721924 53724826 Cca08g00286 08 4137863 4140498 PCT