Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00278 ATGTCGCTCCACGGTAACGACCGTCGCGACGAGCCTTCTATGGGAAGCGCCGGCGCAAACGGCACCGTGGCGGCGGCGAGCCTGAGGCTGCGGCTGAACCCTAACAAGGAGCACAAGCCTGAAGGTTACGAGGACATGGAACTGGATTTCAGCCCTAACATTTTCAGCTCCTTGGAGAGGTACCTCCCTCCGAGCATGCTCAATGTGGCACGAGTCGACAAGGCCAAATTCATGCGCGATATTCTCCTCAAGTATCTCCCCCTCGGAGAACGCAACAGGGCTCAAAAGCATAAAGAATACAGACAGAAGATAATAGCAAATTACCAGCCTCTACATCGAGAGTTGTACTCTGTGAATCCTGCTACATTCTTTGTCCCCTCATTTCTGAAAGCAATTAATGATAATACAGAGCAAAGCTTTAGAAGTATCATGTCTGAGCCCGCTCCAGGAATTTTTGTATTTGACATATTTCAGCCTGACTTTTGCGAGTTATTGCTATCTGAGATTGAAAATTTTGAGAAGTGGGTGACTGAAACAAAATTTCGGATCATGCGTCCCAATACAATGAATAAATATGGTGCTGTACTTGATGACTTTGGGCTTGAAACAATGCTTGACAAGCTTATGGAAGGATTTATACGTCCCTTATCTAAAGGTTTCCATGTGGATGACTCAGAAGTAACCTTAAATGTTTGCTTGGGTAAGCAATTTTCTGGAGGGGAATTGTTTTTTCGGGGCGTACGATGTGAGAAACATGTAAATACTGGAAGTCATTCAGAGGAGATCTTTGATTATTGTCATGTCCCTGGACGAGCTGTGCTTCATCGGGGTCGCCATCGCCATGGTGCTAGAGCTACAACATCTGGTCATCGGGTCAACCTGCTTCTGTGGTGCAGAAGTTCTGTCTTTAGAGAGATGAAACGGTACCAAAAAGATTTCTCCGGCTGGTGTGGCGAGTGCAATCGCGAGAAAAAGGAAAGGCAACGCACCACAATTGCTGCTACCAGATTGGAGTTGTTCAAGAAGGAAGAATCCACTGCATAA 1044 0.4626 MSLHGNDRRDEPSMGSAGANGTVAAASLRLRLNPNKEHKPEGYEDMELDFSPNIFSSLERYLPPSMLNVARVDKAKFMRDILLKYLPLGERNRAQKHKEYRQKIIANYQPLHRELYSVNPATFFVPSFLKAINDNTEQSFRSIMSEPAPGIFVFDIFQPDFCELLLSEIENFEKWVTETKFRIMRPNTMNKYGAVLDDFGLETMLDKLMEGFIRPLSKGFHVDDSEVTLNVCLGKQFSGGELFFRGVRCEKHVNTGSHSEEIFDYCHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSGWCGECNREKKERQRTTIAATRLELFKKEESTA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00278 347 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 219 346 - -
Cca08g00278 347 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 220 - -
Cca08g00278 347 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 219 346 - -
Cca08g00278 347 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 17 220 - -
Cca08g00278 347 MobiDBLite consensus disorder prediction 25 44 - -
Cca08g00278 347 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 182 300 IPR005123 -
Cca08g00278 347 SMART p4hc 149 299 IPR006620 GO:0005506|GO:0016705|GO:0031418
Cca08g00278 347 Gene3D q2cbj1_9rhob like domain 153 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00278 Cca-Chr8 3924099 3934771 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00278 - - gmx:100816390 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00278 08 3924099 3934771 Cca09g02791 09 53546401 53552613 ECH
Cca08g00278 08 3924099 3934771 Cca08g00278 08 3924099 3934771 ECH
Cca09g02791 09 53546401 53552613 Cca08g00278 08 3924099 3934771 PCT