Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00227 ATGCCATGTTCCAAAGAAGAAGCCCTTGTTAGACTCTTCTACAATGcctctagctccttccatcttctcttcctcttcctcttctcctcttcacttcttctCATCAAGTTCTTTAACTTCATTGCCAGCCTCACCATACTCCAAAGAGATCACCACTATGAATATGTGTCTTCTGAGTATgatgaagaagaagaagaagaagaaATTCAAGAAAATTACCCCTATGTCCATGATTCTAATGAGTCAGATCATCTAGTAGCTGACATCATTTGTGGTGGAGAAACCCTTTTGTTTGTGCACAAGAAGCAGCCTCAGAGGACTCATTCATCTTCTGAAGAATTCACAAGCCCCCGGGATAGCCTTGTTGAAGACTCAGAAGAAAACTACTCCACAGAAACGTTGTCCTTTCACAAGTCACCTCTGGTTTCAGACTTTGAAAACGAAGAAGAGGGAGAGGAATTTCCAACAGAAGATGCTGATTCTGTTCCAAATTCTGTTCCAGTTGAAAGCAGGCCCACATCACCCATCACCCTGAACCTCCACAAAAGCGACTTAGTACATAGTGACAAAAACTACAACGAAGATCATGTTGAAATTGGACTTGCTGAAAACAAGAAGGTGCATGAGGCGAGTCTCACACGGGATGAGAGATTCTTTGTCATTGGTCCCACCCAATTGGAGTCTAAGAAACTCATTGTGGAGGAAAAGGACGATGAAGAAATATATGGTGATTCATGCACTGTTGGGTCCACGTCTAAGAGCTCCTCTGATTGGAGGAGCTCCATTAATTGCAGAGATTCTGGAACTGAAGACCCTTTTTCTTCCTCATCAAGACGAAGTTGCCCCAAGTGGGAATCATACACAGTTTTCCAAAAATATGATGAAGAAATGTCATTCCTAGACAGGATTAGCGCACAAAAACTTCATGAAGCTGAGTCTTTAAGGTCCATCAAGGTATCTCCGAGGTCAATTTCAGAGCGTATTGTGTACAAGTTTTCAAGTGGGAATAAAAAAGCAAGTGATGTGCGTGAGAACCCGTATCGTGAACTGGAGGCTGCATATGTTGCACAAATATGCATAACATGGGAAGCCCTTAATTGGAACTACAAGAATTTTCAATCCAAAAGAGCTTCGCGTGGCCATGATGTTGATTTGGGTTGTCCTGCCACCATTGCACAGAGATTCCAACAATTTCAAGTGTTGTTGCAGAGATACGTAGAGAATGAACCTTATGAGCATGGTAGGAGACCTGAGATTTATGCAAGAGTTAGGAATTTGGCTCCAAAATTACTCCTCGTACCAGAATATCGAGAATCAGATGATGATCAGAAGGAGGATAATGGAATTCACTCAAAAATATCATCAGCTTCATTTCTTATGATAATGGAAGATGGGATCAGAACGTTCATGAGTTTTCTGAAGGCTGATAAAGAGAAACCATGTCAGATTCTTGCAGCATACTTTAGGAGAAACCGAAGACACTTGGTTGATCCAACACTTCTCCGCCTTATCAAGAAAGTTAATCAAAAGAAGAAGATGAAAGTGAAAGATCTTCGCCGTTCCCGCAAATGCTTGAGGAAAAGGAAGTTGAAGGGGGAAGAAGAGATGGAGATTTTGATGGCTCTAATAGACCTAAAAGTTGTGTCAAGGGTTTTGAGAATGAGTGAGTTAAGTGAAGAACAGTTGCATTGGTGTGAAGAAAAGATGAGCAAAGTGAGAGTGGTGGAACGGAAGCTTCAAAGAGATTCCACTCCACTTTTTTTCCCTGCACATTGA 1776 0.3975 MPCSKEEALVRLFYNASSSFHLLFLFLFSSSLLLIKFFNFIASLTILQRDHHYEYVSSEYDEEEEEEEIQENYPYVHDSNESDHLVADIICGGETLLFVHKKQPQRTHSSSEEFTSPRDSLVEDSEENYSTETLSFHKSPLVSDFENEEEGEEFPTEDADSVPNSVPVESRPTSPITLNLHKSDLVHSDKNYNEDHVEIGLAENKKVHEASLTRDERFFVIGPTQLESKKLIVEEKDDEEIYGDSCTVGSTSKSSSDWRSSINCRDSGTEDPFSSSSRRSCPKWESYTVFQKYDEEMSFLDRISAQKLHEAESLRSIKVSPRSISERIVYKFSSGNKKASDVRENPYRELEAAYVAQICITWEALNWNYKNFQSKRASRGHDVDLGCPATIAQRFQQFQVLLQRYVENEPYEHGRRPEIYARVRNLAPKLLLVPEYRESDDDQKEDNGIHSKISSASFLMIMEDGIRTFMSFLKADKEKPCQILAAYFRRNRRHLVDPTLLRLIKKVNQKKKMKVKDLRRSRKCLRKRKLKGEEEMEILMALIDLKVVSRVLRMSELSEEQLHWCEEKMSKVRVVERKLQRDSTPLFFPAH 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00227 591 Pfam Protein of unknown function (DUF1666) 349 589 IPR012870 -
Cca08g00227 591 PANTHER DNA LIGASE (DUF1666)-RELATED 1 591 - -
Cca08g00227 591 PANTHER DUF1666 FAMILY PROTEIN 1 591 - -
Cca08g00227 591 MobiDBLite consensus disorder prediction 102 176 - -
Cca08g00227 591 MobiDBLite consensus disorder prediction 245 280 - -
Cca08g00227 591 Coils Coil 508 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00227 Cca-Chr8 3178661 3183326 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00227 - - gsj:114425724 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00227 08 3178661 3183326 Cca08g00227 08 3178661 3183326 ECH
Cca09g02702 09 52698347 52701502 Cca08g00227 08 3178661 3183326 PCT