Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00211 ATGATGGGTTCCACCAGGGTGCCCAAGTTGGGCTCCTTCCGCCACAGCTTCGCCGAGAAGAAGGAGAGGCTTCTGTCAATGAAGGGCGGCGGAGGCTTCTCCCAGATTGGGATCGCGCTGCCGGAGTCCGAGGAGGACGACCCCTcgccccgccgccgccgccgctgctgcTCCTACCGCGCCTTCTCCGACGGGATCGTCGGCGCGTGGCAGACCTCCAAGCGCGTGGCGGAGAAGGCGTGGGAGATGGGGCGCTCCGATCCCAGGAAGATCATTTTCTCCGCCAAAATGGGTCTCGCGCTTATTCTTCTCTCGCTTCTCATTTTCCTCAAGAAGCCCTTCGAGGATGTTAGTCGATACTCCGTTTGGGCCATTCTCACTGTCGTTGTTGTCTTCGAATTCAGCATAGGAGCAACTCTTAGCAAGGGCCTTAACAGAGGATTGGGGACTTTGTTAGCTGGAGGACTAGCTTTGGGAATGGGACTTTTATCAAACTTGGCTGGAAAATGGGAAGAACTTTTTATAATTGTTAGCATCTTCATTGCAGGATTTTGTTCCACGTATGCAAAACAGTATCCAACAGTAAAGGCTTATGAATACGGTTTTCGTGTGTTCTTGATCACCTATTGCTACATTATTTTATCAGGGTATCGAACAGGAGAGTTTGTTGAAACAGCTATAAATAGATTTTTGCTCATTGCACTGGGTGCTGCTGTGGCTCTGGGGATAAATGTATGTATATATCCAATCTGGGCTGGTGAGGATCTACATGATCTTGTGGCAAAAAATTTCATGGGCGTTGCAACATCATTGGAAGGTGTTGTAAATAACTATCTTAATTGTATAGAATATGAGAGAGTGCCTTCCAAAATTCTTACCTACCAAGCTGCTGAGGATGTGGTTTACAATGGCTATAGATCAGCTGTTGAATCTACAAGCAAAGAGGATGCATTGATGGGTTTTGCTGTCTGGGAGCCACCTCATGGCCGATACAAAATGCTTAGATATCCATGGCAAAATTATGTGAAAGTAAGTGGGGCACTAAGGCATTGTGCATTTATGGTCATGGCTATGCATGGATGTATACTTTCTGAAATACAGGCTCCAGCTGAGAAGAGACAAGTCTTTAGCAGGGAGCTTCAGAAGGTTGGATCTGAAGGGGCAAAAATTCTAAGAGAACTTGGGAACAAAGTGAAAAATATGGAGAAACTAGGCCACGAAGACATTCTTTTTGAAGTGCACGAGGCAGCAGAGGAATTGCAACAGAAGATTGACAAAAAATCCTTTCTCCTTGTGAATTCAGAGAGCTGGGAAATTGGAAACAGGCCAAGAGGTGAGGGTGATCCTCAAGACCTCTTGAACGAAGAAAGACACTTTTTGGAGTACAAGTCTCTGAGTGAAGCTGTGCTTGATCTCAGAGCTGTCAAAGTTCCAAAAAGTTGGGAAGAACAACAACAAGCAACTCCTCCGAATATAGCTGCAGTACCTGCAGGTTTTGGTGATGAAAACATGTTCAGTAAACAGATATCTTGGCCTGCTCATATCTCCTTCCGAGCAGATCCAGTGACAAAAGAGGAAGAATCTAGAACCTATGAAAGTGCTAGCTCTCTGTCTCTGGCAACATTCACATCTCTTCTTATTGAGTTTGTGGCAAGGCTCCAGAACCTTGTGGATTCTTTTGAAGAGTTAGGCGAGAAAGCAAAATTTAAGGACCCTCTTGAGCAAGTACCACCAACATCTGGTGGGTTTTGGCACAGGTTGTGTAATTGTTTGACACTCAAGGATTGA 1788 0.448 MMGSTRVPKLGSFRHSFAEKKERLLSMKGGGGFSQIGIALPESEEDDPSPRRRRRCCSYRAFSDGIVGAWQTSKRVAEKAWEMGRSDPRKIIFSAKMGLALILLSLLIFLKKPFEDVSRYSVWAILTVVVVFEFSIGATLSKGLNRGLGTLLAGGLALGMGLLSNLAGKWEELFIIVSIFIAGFCSTYAKQYPTVKAYEYGFRVFLITYCYIILSGYRTGEFVETAINRFLLIALGAAVALGINVCIYPIWAGEDLHDLVAKNFMGVATSLEGVVNNYLNCIEYERVPSKILTYQAAEDVVYNGYRSAVESTSKEDALMGFAVWEPPHGRYKMLRYPWQNYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRQVFSRELQKVGSEGAKILRELGNKVKNMEKLGHEDILFEVHEAAEELQQKIDKKSFLLVNSESWEIGNRPRGEGDPQDLLNEERHFLEYKSLSEAVLDLRAVKVPKSWEEQQQATPPNIAAVPAGFGDENMFSKQISWPAHISFRADPVTKEEESRTYESASSLSLATFTSLLIEFVARLQNLVDSFEELGEKAKFKDPLEQVPPTSGGFWHRLCNCLTLKD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00211 595 PANTHER ALUMINUM ACTIVATED MALATE TRANSPORTER FAMILY PROTEIN 6 594 - -
Cca08g00211 595 Pfam Aluminium activated malate transporter 81 564 IPR020966 GO:0015743
Cca08g00211 595 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 6 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00211 Cca-Chr8 2924041 2930463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00211 9 572 Miscellaneous Gene Families AT3G18440 63.293 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00211 - - gmx:100810157 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00211 08 2924041 2930463 Cca09g02696 09 52605905 52619297 ECH
Cca08g00211 08 2924041 2930463 Cca08g00211 08 2924041 2930463 ECH
Cca09g02696 09 52605905 52619297 Cca08g00211 08 2924041 2930463 PCT