Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02390 ATGGCCACGCTTTATTCAACGCATTGTCGTTCATTCGCATATTCTCCCTCTTCTCcctcctcctcctcctcctcctcctccAACATCGCTTGTCTTCAACGTGTCACCTTCTCACAACGCTTCCTCGCTGCCAAGGCTTCTCTCAAGTCTCAATCCCAATCCCTTCAGGTTCCGCTCAACACCCAGCAACAGGATGGTGCAGTAGCAGCTGCTGTGACCCCTGTTGAAAATGGCACTTCTCACGAGCAGTTGAAAGCTGAATTATTGTGTGTTAGGTCTCCGGAAGAGTCTAAAGGTATAGCTGGTTTTGAAAAGGATGAAAATGAGTCCACCGTTAGTATTACTGTTGTTGGAGCCTCTGGAGACCTTGCGAAGAAGAAGATATTTCCAGCTCTCTTCGCGCTTTACTACGAGGATTGTCTTCCTAAGCACTTCACCATCTATGGTTATGCGCGAAGTAAGATGACTGATGCAGAACTCAGAAATATGGTTAGCAAGACCCTCACTTGTAGAATTGACAAGAGAGAAAACTGCAGTGAGAAGATGGACCAATTTCTAAAAAGATGTTTCTACCATTCTGGTCAATATGATTCTCAGGAAAACTTTGCAGTGCTAGACAAGAAGCTAAAGGAACATGAGGGTGGGAGAACTTCTAATCGCCTGTTTTACCTTTCAATTCCTCCTAATATATTCATAGATGCTGTAAAATGTGCAAGCTTGTCAGCCTCTTCTGGTAATGGTTGGACCAGGGTCATTGTTGAAAAGCCTTTTGGTCGTGATTCAGAATCTTCAGCTGCATTAACAAGATCACTCAAACAGTATCTGACAGAAGATCAAATTTTCAGGATTGACCACTATCTGGGGAAAGAGCTTGTGGAAAATCTTTCTGTTCTCCGATTCTCAAATCTCATCTTTGAACCATTATGGTCAAGGCAGTATATAAGAAATGTACAGTTGATATTCTCAGAAGATTTTGGCACTGAAGGACGTGGCGGGTACTTTGACCATTATGGCATCATAAGAGACATTATGCAGAATCATTTACTTCAAATACTAGCTCTCTTTGCAATGGAAACCCCTGTTAGTTTGGATGCAGAGGATATTAGAAATGAAAAGGTCAAGGTTCTTCGTTCAATGAGACCTCTGCAACTTGAGGATGTGGTTGTAGGCCAGTACAAGAGCCACACAAGAGGAGGTGTTACATATCCAGCCTACGTTGATGACAAAACTGTACCAGATGGCAGCTTAACTCCAACATTTGCTGCGGCTGCCCTCTTCATAGATAATGCAAGATGGGATGGGGTACCTTTTCTGATGAAGGCTGGGAAAGCATTACACAACAAAAGAGCTGAGATACGGGTACAGTTCAGGCATGTGCCAGGTAATCTGTACAATCGGAATTTCGGTGCCGATCTTGATCGGGCCACAAATGAACTTGTTATAAGAGTTCAGCCTGATGAGGCTATTTATTTGAAGATAAACAACAAAGTCCCAGGTCTGGGAATGAAGTTGGACCGCAGTAACCTGAATCTTCACTACGCTGCAAGATATTCAAATGAGATTCCAGATGCTTATGAGAGGCTACTTCTGGATGCCATTGAAGGAGAAAGAAGACTCTTTATACGTAGTGATGAACTTGATGCTGCTTGGTCACTCTTTACACCTGTACTGAAGGAGCTAGAAGAGAAGAAGATAATTCCAGAGTACTATCCTTATGGTAGTAGGGGTCCTGTTGGTGCTCACTATCTTGCAGCTAGATACAACGTAAGGTGGGGTGACCTTGGGACAGACATAGACCATTGA 1803 0.4254 MATLYSTHCRSFAYSPSSPSSSSSSSSNIACLQRVTFSQRFLAAKASLKSQSQSLQVPLNTQQQDGAVAAAVTPVENGTSHEQLKAELLCVRSPEESKGIAGFEKDENESTVSITVVGASGDLAKKKIFPALFALYYEDCLPKHFTIYGYARSKMTDAELRNMVSKTLTCRIDKRENCSEKMDQFLKRCFYHSGQYDSQENFAVLDKKLKEHEGGRTSNRLFYLSIPPNIFIDAVKCASLSASSGNGWTRVIVEKPFGRDSESSAALTRSLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLQLEDVVVGQYKSHTRGGVTYPAYVDDKTVPDGSLTPTFAAAALFIDNARWDGVPFLMKAGKALHNKRAEIRVQFRHVPGNLYNRNFGADLDRATNELVIRVQPDEAIYLKINNKVPGLGMKLDRSNLNLHYAARYSNEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKELEEKKIIPEYYPYGSRGPVGAHYLAARYNVRWGDLGTDIDH 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02390 600 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 284 290 IPR019796 GO:0004345|GO:0006006
Cca07g02390 600 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 284 591 - -
Cca07g02390 600 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 111 593 IPR001282 GO:0006006|GO:0016614|GO:0050661
Cca07g02390 600 Gene3D - 108 282 - -
Cca07g02390 600 PRINTS Glucose-6-phosphate dehydrogenase signature 250 263 IPR001282 GO:0006006|GO:0016614|GO:0050661
Cca07g02390 600 PRINTS Glucose-6-phosphate dehydrogenase signature 274 302 IPR001282 GO:0006006|GO:0016614|GO:0050661
Cca07g02390 600 PRINTS Glucose-6-phosphate dehydrogenase signature 326 343 IPR001282 GO:0006006|GO:0016614|GO:0050661
Cca07g02390 600 PRINTS Glucose-6-phosphate dehydrogenase signature 344 360 IPR001282 GO:0006006|GO:0016614|GO:0050661
Cca07g02390 600 PRINTS Glucose-6-phosphate dehydrogenase signature 431 457 IPR001282 GO:0006006|GO:0016614|GO:0050661
Cca07g02390 600 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 2, CHLOROPLASTIC 22 597 - -
Cca07g02390 600 TIGRFAM zwf: glucose-6-phosphate dehydrogenase 112 592 IPR001282 GO:0006006|GO:0016614|GO:0050661
Cca07g02390 600 Gene3D Dihydrodipicolinate Reductase; domain 2 283 592 - -
Cca07g02390 600 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 116 294 IPR022674 GO:0006006|GO:0016614|GO:0050661
Cca07g02390 600 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 297 591 IPR022675 GO:0004345|GO:0006006|GO:0050661
Cca07g02390 600 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 110 297 IPR036291 -
Cca07g02390 600 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 22 597 IPR001282 GO:0006006|GO:0016614|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02390 Cca-Chr7 52593036 52598037 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02390 K00036 - gmx:100793694 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02390 07 52593036 52598037 Cca07g02390 07 52593036 52598037 ECH
Cca07g02390 07 52593036 52598037 Cca09g00408 09 9881362 9887855 PCT