Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02077 ATGGCGACTATGAACCCCTTTGATTTGTTGGGTGATGACGCTGAGGACCCTTCTCAGCTCATCGCCGCCGAGCAGCTCAAGGCGGCCGCCGCGGTGCCGACCAAGAAGCCGCCCGCTCAGCAGCGCGCCGGTCAGACCAACAAGCCGGCTCAGCTGCCTACCAAGCCACCTCCCCCGGCTCAGGCTGTGAGGGAGTCCAGAAATGAGCCTGTTCGTGGAggccgtgggggtggacgaggtggtgggcgtggatatgggcgtggtcgtgggtttggtcgtgACTCTTCTAATGATGAGAATTCATTCCCTGCCACTGGAGCTCCTTTTAATCAGGGTTCTTTTGAAGAAGGAGATGCTGCGAAGTCTTCTGAAAGACGCAGTTATGGTGGACCACGAGCTCCTTACCGTGGAGGTCGTCGTGGAGGTTTCAGTAATGGTGAAACCGGTGAAGGTGAAGAAGGACGTCCTCGAAGAACATATGATCGTCGCAGTGGGACTGGAAGAGGAAATGAATTCAAACGTGAAGGTGCTGGGCGTGGTAACTGGGGAACACAAACTGATGAAATTTCTCAGGCAACTGATGAAGTTGGAATTGAAACTGAAAAGAATGTGGGTGATGAGAAGCCTGCAGTTGAAGATGTAACTGATGGAAACAAGGACAGTCCTGCTAATGAAACCGAAGAAAAAGAGCCTGAAGATAAGGAGATGACTCTGGAGGAATATGAGAAAGTGTTGGAAGAGAGAAGGAAGGCATTCCAGGCACTCAAGACTGAAGGGAGAAAGGTAGACACTAAAGTGTTTGAATCCATGCAGCCCTTGTCAAGCAAGAAAGACAATCATGACATATTTATTAAACTGGGATCTGATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAGAAATCCAAGAAGTCTGTCCCAATCACCGAATTTCTGAAGCCTGCTGAGGGGGAAACATACTATAGCCCAGGTGGGCGTGGTAGGGGGCGTGGTGGGCGTGGCTCCCGAGGTGGTTACCGTGGAAGTGCCATCAACAATGCACCTGCTCCATCCATTGAAGATCCCGGGCATTTCCCAACCTTGGGTGGCAAGTGA 1098 0.4781 MATMNPFDLLGDDAEDPSQLIAAEQLKAAAAVPTKKPPAQQRAGQTNKPAQLPTKPPPPAQAVRESRNEPVRGGRGGGRGGGRGYGRGRGFGRDSSNDENSFPATGAPFNQGSFEEGDAAKSSERRSYGGPRAPYRGGRRGGFSNGETGEGEEGRPRRTYDRRSGTGRGNEFKREGAGRGNWGTQTDEISQATDEVGIETEKNVGDEKPAVEDVTDGNKDSPANETEEKEPEDKEMTLEEYEKVLEERRKAFQALKTEGRKVDTKVFESMQPLSSKKDNHDIFIKLGSDKDKRKEAFEKEEKSKKSVPITEFLKPAEGETYYSPGGRGRGRGGRGSRGGYRGSAINNAPAPSIEDPGHFPTLGGK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02077 365 Coils Coil 238 258 - -
Cca07g02077 365 MobiDBLite consensus disorder prediction 150 175 - -
Cca07g02077 365 MobiDBLite consensus disorder prediction 183 197 - -
Cca07g02077 365 MobiDBLite consensus disorder prediction 1 237 - -
Cca07g02077 365 MobiDBLite consensus disorder prediction 289 365 - -
Cca07g02077 365 Pfam Hyaluronan / mRNA binding family 156 262 IPR006861 -
Cca07g02077 365 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 365 - -
Cca07g02077 365 MobiDBLite consensus disorder prediction 199 237 - -
Cca07g02077 365 MobiDBLite consensus disorder prediction 289 308 - -
Cca07g02077 365 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 365 IPR039764 GO:0003723
Cca07g02077 365 Gene3D - 154 266 - -
Cca07g02077 365 Pfam Stm1 1 77 IPR019084 -
Cca07g02077 365 SMART HABP4_PAI_RBP1_2 156 263 IPR006861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02077 Cca-Chr7 48475139 48481087 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02077 K13199 - gmx:100814825 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02077 07 48475139 48481087 Cca07g02077 07 48475139 48481087 ECH
Cca01g01573 01 35085564 35089879 Cca07g02077 07 48475139 48481087 PCT