Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01573 ATGGCCACTGCGAATCCTTTCGATTTGTTGGGCGACGATGCCGAGGACCCCTCGCAGCTGATCGCGGCGGAGCAGCTCAAGGCCGCCGCGGCGCCGCCCAAGAAGGAGCAGGCCAAGCCCGGAGCTCGCGGCGGCGCGGTGGCTCAGCCGAGCAAGCCGGCTCAGTTGCCGTCCAAGCCTCTTCCTCCCACTCAGGCTGTGAGGGAGGCTAAAAGTGATGTTTCTCGTGgtggccgtggaggtggccgaggaggtggacgcggatttggacgtggtcgtggaagtggTGGCTTTGGCCGTGATTATTCCAATGATGAGAACTCATCGGCCCCTGCTAACCAAGGTGCTTTTGAAGGAGATGATTCTGGGAATCCCTCAGAAAGACGTGGTTATGGTGGACCTGGTGGACCTCGTGGGCCTTATCGTGGTGGTGGTCGCCGTGGAGGCTTTAGCAATGGTCAAGTTGGTGAAGATGGACGTCCACGGAGAGCATTTGAACGTCACAGTGGGACTGGACGAGGAAATGAATTCAAGCGTGATGGTGCTGGACGTGGGAACTGGGGTACACAGTCTGATGATATTGCTGAGGTGACTGAGGAAGTGGTTAATGAATCTGAAAAGAATTTGGGTGATGAGAAGCCTGCAGGCGAGGAAGATGGAGCAGAAGGAAACAAGGACAGTCCTGCTAATGAAAATGAAGAAAAGGAGCCTGAGGATAAGGAGATGACACTGGAAGAATATGAGAAAGTGCTGGAAGAGAGAAGGAAGGCTCTGCAGGCACTTAAGACTGAAGCGACAAGAAAGGTGGATATCAAGGAGTTTGCTTCAATGCAGCCACTGTCAAACAAGAAAGACAATGATGAGATATTTATTAAATTGGGATCTGACAAGGATAAGCGCAAAGATGCTTTGGATAAGGAGGAGAAATCTAAGAAGTCTGTCAACATCCATGAGTTTCTGAAACCCGCTGAAGGAGAAAGGTACTATAACCCTGGTGGGCGTGGTAGGGGACGTGGCCGTGGTTCTAGAGGAGGTTACAGTGGAAATGCAGGAAGCAATGTACCAGCTCCATCAATTGAGGATCCTGGTCAATTCCCAACCTTGGGTGGCAAGTGA 1116 0.491 MATANPFDLLGDDAEDPSQLIAAEQLKAAAAPPKKEQAKPGARGGAVAQPSKPAQLPSKPLPPTQAVREAKSDVSRGGRGGGRGGGRGFGRGRGSGGFGRDYSNDENSSAPANQGAFEGDDSGNPSERRGYGGPGGPRGPYRGGGRRGGFSNGQVGEDGRPRRAFERHSGTGRGNEFKRDGAGRGNWGTQSDDIAEVTEEVVNESEKNLGDEKPAGEEDGAEGNKDSPANENEEKEPEDKEMTLEEYEKVLEERRKALQALKTEATRKVDIKEFASMQPLSNKKDNDEIFIKLGSDKDKRKDALDKEEKSKKSVNIHEFLKPAEGERYYNPGGRGRGRGRGSRGGYSGNAGSNVPAPSIEDPGQFPTLGGK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01573 371 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 371 IPR039764 GO:0003723
Cca01g01573 371 MobiDBLite consensus disorder prediction 101 115 - -
Cca01g01573 371 MobiDBLite consensus disorder prediction 200 245 - -
Cca01g01573 371 Coils Coil 244 268 - -
Cca01g01573 371 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 371 - -
Cca01g01573 371 MobiDBLite consensus disorder prediction 27 245 - -
Cca01g01573 371 SMART HABP4_PAI_RBP1_2 161 270 IPR006861 -
Cca01g01573 371 MobiDBLite consensus disorder prediction 159 180 - -
Cca01g01573 371 Pfam Stm1 1 81 IPR019084 -
Cca01g01573 371 MobiDBLite consensus disorder prediction 294 324 - -
Cca01g01573 371 MobiDBLite consensus disorder prediction 294 371 - -
Cca01g01573 371 Gene3D - 159 273 - -
Cca01g01573 371 Pfam Hyaluronan / mRNA binding family 161 265 IPR006861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01573 Cca-Chr1 35085564 35089879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01573 K13199 - gmx:100791259 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01573 01 35085564 35089879 Cca01g01573 01 35085564 35089879 ECH
Cca01g01573 01 35085564 35089879 Cca07g02077 07 48475139 48481087 PCT