Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02062 ATGGAAAACTCTGTTTCCTCTATCTCCCTCACTTTCCCTCCAAACCCCACACCCAGCATTTTCCGAGTCTTCAGCTTCAGACCCTCCAAAACCCATCACACAAAGCCTCCCAAATTCACCACTCGCACCCCAAGGAAGCACAAGAAGAAGGTGAAACAATTCACCGAAAAAGACGCGTTTCCATGCTCCCTACCCCTCCACAACAAAAACCCAATCTTCATCTACAAAGACATCAAGCGTTTCGCTCGCCTCAACAAGCTCAAGGAGGCTCTTACCATCTTGGACTACCTCGACCAGCGCGGCATCCCCGTCAACGCCACCACCTTCTCCGCCCTCATCGCCGCCTGCACCCGCACCAAGTCACTCTCCCAAGGGAGGGAAGTCCACACCCAAATCAGAACCAACGGGCTCGAAAAGAACGCTTTTTTGCGGACAAAGCTGGTTCACATGTACACCGCTTGTGGCTCAGTACAAGAGGCACAGAAACTGTTCGATGGATTGCCCTGCGAGAGTGTGTACCCCTGGAACGCTTTGCTCAGAGGGACTGTTGTTTCGGGCAAAAGAAAGTACATTGATGTGGTTAGAACCTATTCCGAGATGAGGGCATTGGGGGTTGAGTTGAATGTGTATAGTTTCTCCAATGTGATCAAGAGCTTCGCTGGCGCTGCGGCGTTTTCGCAGGGGTTGAAGACTCATGGGCTTTTGATCAAGAATGGATTGGTGGATAGCTACATTCTTAGGACTTGTATGATTGACATGTACTTCAAGTGTGGGAAGGTTCGGCTCGCGTGCAGGGTGTTTGAGGAAATTCCCCAGAGGGATGTTGTCGTGTGGGGGACGATGCTTGCCGGTTTCGCGCACAATAGGCTGCAGAGGGAGGTTTTGGAGTATGTGAGGTGGATGGTGGAGGAGGGAGTGAAGCCAAATTCGGTTGTGATGACTACTGTTATTCCTGTGATTGGGGAGGTTCGTGCAAGGAGGTTGGGCCAGGAGTTTCATGCTTATGTTGTGAAAACGAAGTCGTATGCCAAACAGGTGCCGGTGCAGTCTTCATTGATTGATATGTATTGCAAGTGTGGGGATATGATTTCGGCGAGGCGGGTTTTCTATGGTTCGAATGAGAGGAATGCAGTTTGTTGGACGGCTCTGATGGCTGGTTATGCTTTGAATGGGAAGCTGGAGCAAGCGCTGAGGTCCACGATTTGGATGCAGCAAGAAGGGTTCCGGCCTGATGCAGTGACACTTGCCACTGTTCTTCCGGTTTGTGCACAGTTGAGGGCACTGGAACAAGGGAAGCAGATTCATGCTTATGCTTTGAAACGTTGGTTTTTGCCTAATGTGTCTATAACTTCTTCATTGATGATGATGTACTCCAAGTGTGGTGTTATTGAGTATTCTAAAAGGTTATTTGATAATATGGAACAGAGGAATGTGATTTCATGGACGGCCATGATCGATTCATGTATAGAAAATGGGTGTCTGTTTGAAGCGCTTGGTGTGATGAGGGCAATGCAATTGTCAAAGCACAGGCCTGATTCTGTTGCTATAGCAAGGATGTTGAGTGTTTGTGGTGAACTAAAACTTGTAAAGCTTGGGAAGGAGATTCATGGGCAGATGTTGAAAAGGGACTTTAAATCAGTCCCTTTTGTTTCTGCAGAACTCATCAATATGTATGGTTCATCTGGAGATATTAATAAGGCTAAGTTGGTGTTTGATGCAGTTCCCGTTAAAGGTTCTATTACATGGACCGCTCTTATAAGGGCCTATGGATATAATGAATTGTACCAAGATGCAATTAACCTTTTTAATATGATGAAATATTCTCCAAACCACTTCACTTTTGAAGCCATTCTATCTATATGCGACAGAGCTGGATTAGCAGACGATGCTTGTAGAATCTTCAATTTAATGTCTAGATATAAAGTTGAAGCATCTAAGGAACACTTTGCTATTATGGTTCGACTGCTTACTCGCAATGGTCAACTAGAGAAAGCTCAGAGATTTGACCAAATGAGTTCTTTCTTGTAA 2028 0.4625 MENSVSSISLTFPPNPTPSIFRVFSFRPSKTHHTKPPKFTTRTPRKHKKKVKQFTEKDAFPCSLPLHNKNPIFIYKDIKRFARLNKLKEALTILDYLDQRGIPVNATTFSALIAACTRTKSLSQGREVHTQIRTNGLEKNAFLRTKLVHMYTACGSVQEAQKLFDGLPCESVYPWNALLRGTVVSGKRKYIDVVRTYSEMRALGVELNVYSFSNVIKSFAGAAAFSQGLKTHGLLIKNGLVDSYILRTCMIDMYFKCGKVRLACRVFEEIPQRDVVVWGTMLAGFAHNRLQREVLEYVRWMVEEGVKPNSVVMTTVIPVIGEVRARRLGQEFHAYVVKTKSYAKQVPVQSSLIDMYCKCGDMISARRVFYGSNERNAVCWTALMAGYALNGKLEQALRSTIWMQQEGFRPDAVTLATVLPVCAQLRALEQGKQIHAYALKRWFLPNVSITSSLMMMYSKCGVIEYSKRLFDNMEQRNVISWTAMIDSCIENGCLFEALGVMRAMQLSKHRPDSVAIARMLSVCGELKLVKLGKEIHGQMLKRDFKSVPFVSAELINMYGSSGDINKAKLVFDAVPVKGSITWTALIRAYGYNELYQDAINLFNMMKYSPNHFTFEAILSICDRAGLADDACRIFNLMSRYKVEASKEHFAIMVRLLTRNGQLEKAQRFDQMSSFL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02062 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Cca07g02062 675 Gene3D Tetratricopeptide repeat domain 337 427 IPR011990 GO:0005515
Cca07g02062 675 Gene3D Tetratricopeptide repeat domain 549 673 IPR011990 GO:0005515
Cca07g02062 675 Gene3D Tetratricopeptide repeat domain 74 191 IPR011990 GO:0005515
Cca07g02062 675 Gene3D Tetratricopeptide repeat domain 224 335 IPR011990 GO:0005515
Cca07g02062 675 Gene3D Tetratricopeptide repeat domain 428 548 IPR011990 GO:0005515
Cca07g02062 675 TIGRFAM PPR: pentatricopeptide repeat domain 479 513 IPR002885 -
Cca07g02062 675 TIGRFAM PPR: pentatricopeptide repeat domain 580 606 IPR002885 -
Cca07g02062 675 TIGRFAM PPR: pentatricopeptide repeat domain 248 276 IPR002885 -
Cca07g02062 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Cca07g02062 675 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 20 668 - -
Cca07g02062 675 Pfam PPR repeat 479 505 IPR002885 -
Cca07g02062 675 Pfam PPR repeat 580 606 IPR002885 -
Cca07g02062 675 Pfam PPR repeat 451 478 IPR002885 -
Cca07g02062 675 Pfam PPR repeat 350 369 IPR002885 -
Cca07g02062 675 Pfam PPR repeat 248 274 IPR002885 -
Cca07g02062 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Cca07g02062 675 Pfam PPR repeat family 376 422 IPR002885 -
Cca07g02062 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Cca07g02062 675 PANTHER OS07G0578800 PROTEIN-RELATED 20 668 IPR045215 GO:0003723|GO:0009451
Cca07g02062 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02062 Cca-Chr7 48142025 48144248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02062 78 668 Glycoside Hydrolase AT3G49170 27.063 1.05e-71 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02062 - - gmx:100809249 1163.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01537 01 33741927 33743595 Cca07g02062 07 48142025 48144248 PCT