Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01926 ATGTCTTCCCCAAGCAAGCGTCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGACGATTAATGATGGAATGCAAGAATTTTATGTTCTTTTTCATGGACCCAAAGAAAGTCCTTATTATGGTGGTGTTTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTATAAATCTCCTTCCATTGGTTTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCTAATCCATCAGACCCCTTGAATGGAGAAGCTGCGGCTTTAATGATGCGTGACCGAGCTACTTATGACCAAAGGGTTAAAGACTTGCTATGCTTTCTTTGCAGTTTTTTAACATGTCAACCACGATCAAAATCTAAGCCAAGAAGGACATTTGAACTAACATTTTTGACCTCTGGGTAG 519 0.4008 MSSPSKRREMDLMKLMMSDYKVETINDGMQEFYVLFHGPKESPYYGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYDQRVKDLLCFLCSFLTCQPRSKSKPRRTFELTFLTSG 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01926 172 Gene3D Ubiquitin Conjugating Enzyme 1 144 IPR016135 -
Cca07g01926 172 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Cca07g01926 172 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4-RELATED 3 150 - -
Cca07g01926 172 SUPERFAMILY UBC-like 4 142 IPR016135 -
Cca07g01926 172 SMART ubc_7 4 148 - -
Cca07g01926 172 Pfam Ubiquitin-conjugating enzyme 10 141 IPR000608 -
Cca07g01926 172 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Cca07g01926 172 CDD UBCc 7 140 IPR000608 -
Cca07g01926 172 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01926 Cca-Chr7 46461378 46464396 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01926 K10576 - gmx:100804969 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01926 07 46461378 46464396 Cca07g01926 07 46461378 46464396 ECH
Cca07g01926 07 46461378 46464396 Cca01g02281 01 51196004 51199010 PCT