Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02281 ATGTCTTCTCCAAGCAAACGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAAGTGGAGATGATTAACGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAAAGAGAGTCCCTATCATGGAGGTGTGTGGAAAGTAAGAGTTGAGTTGCCAGATGCTTATCCTTATAAGTCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTCATCAATCAAACCTGGAGTCCCATGTTTGATCTGGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTCTTGTACCCCAATCCCTCGGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAGGACATAGGAGCTGCCACGGAAGAGAAATCCAGTGATGAGGAGTTAAGTGAAGATGAATATGATTCTAGTGATGAACAAGTTGCTGGTAAGGCAGACCCCTAG 552 0.4293 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPKESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKEYCEKYAKPEDIGAATEEKSSDEELSEDEYDSSDEQVAGKADP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02281 183 MobiDBLite consensus disorder prediction 150 183 - -
Cca01g02281 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Cca01g02281 183 SMART ubc_7 4 148 - -
Cca01g02281 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Cca01g02281 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Cca01g02281 183 CDD UBCc 7 143 IPR000608 -
Cca01g02281 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Cca01g02281 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Cca01g02281 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Cca01g02281 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02281 Cca-Chr1 51196004 51199010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02281 3 150 Miscellaneous Gene Families AT3G17000 23.418 1.68e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02281 K10576 - gmx:100804969 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02281 01 51196004 51199010 Cca01g02281 01 51196004 51199010 ECH
Cca07g01926 07 46461378 46464396 Cca01g02281 01 51196004 51199010 PCT