Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01917 ATGTCAGAAATTGACATGGCGGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTGAGACATCAGACGGTTCAATCCAACAAGTGGAACAAGAAATTGCAATGTATTGTCCTCTGATTTGTCAAGAAATAATACAAAAGGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCGATGTTGAGCTTAATTCTTGATTATTGTCGTTTTCACCAAGTACCGGGTCGCTCAAACAAGGAACGAAAATCTTATGATGAGAAGTTCATTAGGATGGAAACGAAACGGCTCTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACGAGTCGTGCACTTGCTCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTTACTGAGGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATCGATTGTATGCCAAAAAGAGAAAAGAACTAAGAGAGCGTGAGAGGTTAAAGAATGTTGAAGCTGAAGAAGAGCATGCAGATGAACGTTCAGTTGATGACCTTTTATCTTTCATTAATGGAAATGGAGATCCAAAGGGAATTAAAGCATCCaagaataaaaagaaaaatagaagaaaaaaagagcaacaacagaagaaCTCTTCTCCGAAGGAAGCTTCTGAGGAAGTAAATGGTCAAAATATCAGACACCAAAGTGTTGAAGCTGATGGAATTGCTGAGACCTCAAATTCACATACAGAAGACCTTTTTGCTCAAAAGGAGTTTGATGATGGAGATGATGGGATTGATCCTGCACTGAAGGAAAAAATTGACAGGGAAGTGGCAGATTTTGCCCGGCTTTTCTACGGCGAAATGCTTGACTTGACTTGGATGGATTGGAAATGA 957 0.3918 MSEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICQEIIQKGMGSSKNCAICLPQRVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFIRMETKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELRERERLKNVEAEEEHADERSVDDLLSFINGNGDPKGIKASKNKKKNRRKKEQQQKNSSPKEASEEVNGQNIRHQSVEADGIAETSNSHTEDLFAQKEFDDGDDGIDPALKEKIDREVADFARLFYGEMLDLTWMDWK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01917 318 PANTHER SKP1 1 261 IPR016897 GO:0006511
Cca07g01917 318 MobiDBLite consensus disorder prediction 271 286 - -
Cca07g01917 318 Coils Coil 170 195 - -
Cca07g01917 318 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Cca07g01917 318 PANTHER SKP1-LIKE PROTEIN 20 1 261 - -
Cca07g01917 318 MobiDBLite consensus disorder prediction 240 270 - -
Cca07g01917 318 SUPERFAMILY POZ domain 16 80 IPR011333 -
Cca07g01917 318 MobiDBLite consensus disorder prediction 187 203 - -
Cca07g01917 318 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Cca07g01917 318 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Cca07g01917 318 MobiDBLite consensus disorder prediction 187 286 - -
Cca07g01917 318 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Cca07g01917 318 SMART skp1_3 15 116 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01917 Cca-Chr7 46298809 46305643 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01917 - - gmx:100809439 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01917 07 46298809 46305643 Cca07g01917 07 46298809 46305643 ECH
Cca01g02276 01 51107298 51115034 Cca07g01917 07 46298809 46305643 ECH
Cca07g01917 07 46298809 46305643 Cca01g02276 01 51107298 51115034 PCT