Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02276 ATGTCAGAAATTGACATGGCAGTTATTAAACCCGAGATGATGAAGCCTTATGTTTGGCTTCAAACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCCCTGATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCTAAGAATTGTGCAATATGCCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGATTTCATCAAGTGCCAGGCCGCTCAAACAAGGAACGCAAGTCTTATGATGAGAAATTCGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCATTGGTTGATCTTACCAGTCGTGCACTTGCTCGAATAATCGAAGGGAAATCACCAGAGGAGATACGTGATATATTTCATTTGCCCGATGATCTTACAGAGGAAGAAAAGTTGGAGCCCTTGAGAAATATAACTGCCGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCCAAAAAGAGAAAAGAACTAAAAGAGCGTGAAAGGTTAAAGAATATTGAAGTTGAAGAAGAGCATGTGGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGAAGGAGAACCAAAGGGAGTTAAAACTTCAAAAAATAAAAAGAAGAACCGTAGGAAAAAAGAGCAACAGAAGAACTCTTCTTCGAAGGAGACATCTGAACTGGACAAGAAGGAGGTAAATGGTCATGATATCAGACACCAAAGTTCTGAAGCTGAGAGAATTAGCGAGTCCTCATATTTACACTACGCAGAAGATGGCACTTCTACTCCTAAGTCTGATGATGGTGATATATATGATGGGATTGATCCTGCGTTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTGTTATCTTCAGGTCAAGACCGGAAGACACTGCTTTTTAATACAGATGGTTTTCTAAGGCGACATGCTTGA 1038 0.3979 MSEIDMAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERLKNIEVEEEHVDERSVDDLLSFINGNEGEPKGVKTSKNKKKNRRKKEQQKNSSSKETSELDKKEVNGHDIRHQSSEAERISESSYLHYAEDGTSTPKSDDGDIYDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQDRKTLLFNTDGFLRRHA 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02276 345 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Cca01g02276 345 Coils Coil 170 190 - -
Cca01g02276 345 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Cca01g02276 345 MobiDBLite consensus disorder prediction 208 292 - -
Cca01g02276 345 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Cca01g02276 345 MobiDBLite consensus disorder prediction 235 264 - -
Cca01g02276 345 PANTHER SKP1-LIKE PROTEIN 20 1 279 - -
Cca01g02276 345 PANTHER SKP1 1 279 IPR016897 GO:0006511
Cca01g02276 345 SUPERFAMILY POZ domain 16 80 IPR011333 -
Cca01g02276 345 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Cca01g02276 345 SMART skp1_3 15 116 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02276 Cca-Chr1 51107298 51115034 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02276 - - gmx:100794666 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02276 01 51107298 51115034 Cca01g02276 01 51107298 51115034 ECH
Cca01g02276 01 51107298 51115034 Cca07g01917 07 46298809 46305643 ECH
Cca07g01917 07 46298809 46305643 Cca01g02276 01 51107298 51115034 PCT