Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01916 ATGGCTTCACTTGGAGCTACCTGTGCTGTGTGTTCTGTGTTCATGATGTTTGTCACCTTCACTCTCGCTGGGGACATAGTGCACCCTGATAATATTGCCCCCAAGAAGCCTGGCTGTGACAACAACTTTGTCCTGGTTAAAGTCCCAACTTGGATTGATGGTGTGGAAAGCTGTGAGTATGTTGGTGTTGGTGCAAGATTTGGCCCGACATTGGAATCTAAAGAAAAGCATGCTAACCATACTAGAGTTGCCATTGCGGACCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACTGGCGAGGTCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTCATTATAAATTATCGTACAGAACTTTTCAAGATGGTCTGTGAAGCGAATGAAACTAATGTTGATATTGGAATACCTGCTGTAATGCTTCCGCAAGATGCCGGTGAAACCTTGGAAAATCGTATACTAAACAATTCAGTAGTGTCTGTGCAGTTGTATTCTCCACTGCGTCCATTGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCCGTTGGTACCATTCTCTGTGCTTCTTATTGGTCTGCTTGGACTGCCAGAGAGACGGCTGTTGAGCAGGAGAAGCTATTAAAGGATGCTTCAGATGAATATGTAAATGCTGAGAATGTTGGTTCTAGTGCTTATGTGGAAATCAGTACTGCAGCAGCAATATCATTTGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTTTACAAATTGATGGCATCATGGTTTGTTGAAGTTCTGGTGGTTCTATTTTGCATTGGTGGGGTTGAGGGGCTACAAACTTGCTTGGTGGCCTTGTTATCATGTTTCAGATGGTTCCAACATGCTGCACAAACATATGTCAAAGTACCCTTCTTTGGTGCTGTATCATATCTGACAGTTGCTGTTACTCCCTTCTGCATAGTGTTTGCTGTGCTTTGGGGAGTTTATCGTCGTGTATCATTTGCTTGGATTGGTCAAGATATTCTTGGCATTACATTGATAATTACAGTTCTACAGATTGTTCGCATACCAAATCTCAAGGTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTTTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCCATGCTACTCAAGATACCACGTTTGTTTGATCCTTGGGGTGGTTACAGTATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTGAGGTATGATTGGTTGGCAAAGAAGAACCTTAGGGATGGATACTTTCTGTGGGCAATGACTGCTTACGGTTTAGGTCTCCTTATCACATACGTGGCTTTGAACTTGATGGATGGACATGGTCAACCGGCTTTGCTTTATATAGTCCCATTTACACTTGGTACCTTTTTGTCACTGGGAAAGAAGAGAGGTGAACTCAAGATTTTATGGACAAGAGGTGAACCAAAAATACTTTGCCCGCACATCCAAGAGGATCAATCAACAAATCAGTAA 1617 0.4292 MASLGATCAVCSVFMMFVTFTLAGDIVHPDNIAPKKPGCDNNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKHANHTRVAIADPPDCCSKPKNKLTGEVILVHRGQCSFTTKANIAEEAGASAILIINYRTELFKMVCEANETNVDIGIPAVMLPQDAGETLENRILNNSVVSVQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTARETAVEQEKLLKDASDEYVNAENVGSSAYVEISTAAAISFVVIASCFLVMLYKLMASWFVEVLVVLFCIGGVEGLQTCLVALLSCFRWFQHAAQTYVKVPFFGAVSYLTVAVTPFCIVFAVLWGVYRRVSFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRDGYFLWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELKILWTRGEPKILCPHIQEDQSTNQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01916 538 Pfam PA domain 89 166 IPR003137 -
Cca07g01916 538 Coils Coil 218 238 - -
Cca07g01916 538 SUPERFAMILY PA domain 98 138 IPR046450 -
Cca07g01916 538 Gene3D - 39 183 - -
Cca07g01916 538 Pfam Signal peptide peptidase 243 522 IPR007369 GO:0004190|GO:0016021
Cca07g01916 538 PANTHER PA DOMAIN, PRESENILIN/SIGNAL PEPTIDE PEPTIDASE-RELATED 7 535 - -
Cca07g01916 538 SMART psh_8 242 511 IPR006639 GO:0004190|GO:0016021
Cca07g01916 538 PANTHER SIGNAL PEPTIDE PEPTIDASE 7 535 IPR007369 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01916 Cca-Chr7 46290083 46297321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01916 K09597 - gmx:100808921 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01916 07 46290083 46297321 Cca07g01916 07 46290083 46297321 ECH
Cca07g01916 07 46290083 46297321 Cca01g02275 01 51094751 51103461 PCT