Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02275 ATGGTGTCACTGGGAGCTACATATAGTGTGGTCTATGCGTTTCTGCTTGGTGTCACTTTGGTTTTGGGTGGGGATATAGTTCACCATGATGATGTAGCCCCCAGAAGGCCTGGTTGTGAGAACAACTTTGTTTTGGTAAAAGTCCCCACTTGGATTGATGGTGTGGAAAACAATGAGTATGTTGGTGTGGGTGCAAGATTTGGCCCTACATTGGAATCAAAAGAAAAACGTGCCAATCTTACAAGAGTTGTCATGGCTGATCCTCCTGATTGTTGTACAAAGCCTAAGAATAAGCTCACCAGCGAGATCATTTTGGTGCACCGAGGAAAATGTAGTTTCACAACCAAGGCAAATATAGCTGATGAAGCTGGCGCTTCAGCCATCCTCATTATAAATTACCGTACAGAACTTTTCAAGATGGTTTGTGAAGAAAATGAAACTGATGTTGATATTGGAATACCTGCTGTCATGCTTCCGCAAGATGCTGGATTGAACTTGGAAAGGCATATAAAAAATAACTCCAATGTCTCCATACAGTTATACTCTCCACTGCGTCCATTGGTTGACGTTGCAGAAGTGTTTTTGTGGCTCATGGCTGTTGGTACCATTATAAGTGCTTCTTATTGGTCTGCCTGGAGTGCCAGAGAAGCGGCTATTGAGCAAGAGAAGCTTCTAAAGGATGCTTCAGATGATTATGCTAATACAGAAAATGTTGGTTCCAGTGGTTATGTGGAAATCAGTACTGCAGCAGCAGTTTTATTTGTCGTGATTGCTTCTTGTTTCTTGGTTATGCTGTATAAATTAATGTCATTTTGGTTTGTTGAAGTTCTGGTGGTTCTGTTTTGCGTTGGTGGGGTAGAGGGACTGCAAACTTGTTTGGTGGCTCTGTTATCATGTTTCAGATGGTTTCAACCATCAGCACAAACATTTGTGAAGATACCCTTCTTTGGAGCTGTCTCATATCTGACACTTGCTGTTACTCCATTCTGCGTAGTGTTTGCCGTGGTTTGGGCAGTTTATCGCCGTGCATCATGGGCTTGGATTGGTCAGGATATCCTTGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAGGTTGGAACTGTCCTTCTCAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTTGCTCGAGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTTCTCAAGATACCACGTCTGTTTGACCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTAGCATTTTCGCTAAGGTTGAATTGGAAGTCATATGTTGATCATACAATACATACCTTTCCTACTCATCTACCTTCTGTTACTGATTTTCTTGTTGTAGAATACATGTCCACATTATTTCATTGTAAAAATGTTTTAGATAGAGGAGAATGGTCTTTTATCTGA 1497 0.4162 MVSLGATYSVVYAFLLGVTLVLGGDIVHHDDVAPRRPGCENNFVLVKVPTWIDGVENNEYVGVGARFGPTLESKEKRANLTRVVMADPPDCCTKPKNKLTSEIILVHRGKCSFTTKANIADEAGASAILIINYRTELFKMVCEENETDVDIGIPAVMLPQDAGLNLERHIKNNSNVSIQLYSPLRPLVDVAEVFLWLMAVGTIISASYWSAWSAREAAIEQEKLLKDASDDYANTENVGSSGYVEISTAAAVLFVVIASCFLVMLYKLMSFWFVEVLVVLFCVGGVEGLQTCLVALLSCFRWFQPSAQTFVKIPFFGAVSYLTLAVTPFCVVFAVVWAVYRRASWAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLIVAFSLRLNWKSYVDHTIHTFPTHLPSVTDFLVVEYMSTLFHCKNVLDRGEWSFI 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02275 498 PANTHER SIGNAL PEPTIDE PEPTIDASE 6 455 IPR007369 GO:0004190|GO:0016021
Cca01g02275 498 SMART psh_8 242 487 IPR006639 GO:0004190|GO:0016021
Cca01g02275 498 Pfam Signal peptide peptidase 243 460 IPR007369 GO:0004190|GO:0016021
Cca01g02275 498 PANTHER PA DOMAIN, PRESENILIN/SIGNAL PEPTIDE PEPTIDASE-RELATED 6 455 - -
Cca01g02275 498 Pfam PA domain 89 166 IPR003137 -
Cca01g02275 498 Gene3D - 39 183 - -
Cca01g02275 498 SUPERFAMILY PA domain 98 136 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02275 Cca-Chr1 51094751 51103461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02275 K09597 - gmx:100795197 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02275 01 51094751 51103461 Cca01g02275 01 51094751 51103461 ECH
Cca07g01916 07 46290083 46297321 Cca01g02275 01 51094751 51103461 PCT