Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01909 ATGGATAAATCATCAAACTTTGATGAAAACTCTGATGTGGGGGGCTATCACCCTTCACCTTCCAATACTCCTGCTTTTTCCACAATGAGTGGTGATTCTTTTGCGTGCTGCCAAACTTGGACAAGCTCAGAATCTGAGACTATAGATGAGAGCAGCTATGCCAGTGAACCTTCACCATCTCGGTGGAGGGCTAAACAAGATGTTCTTTCAAAGCTAGGAATGAAGCTTCGCAAGCATTCAATGGATGATAAACTTGATGCCTGTGAGGATTCAGCCGAGCTTGAAATGATGAAGGAAAGATTTGCAAAGCTTCTGCTGGGCGAAGACATGTCTGGTAGTGGGAAAGGTGTTTGCACTGCTGTTACAATCTCAAATGCCATTACCAATCTCTATGCAACTGTATTTGGACAAAGTTTAAAGTTGGAGCCACTAAAGCCAGAGAAGAAGGCTATGTGGAAAAGGGAAATGAAGGTTCTTCTATCAGTGTGTGATTACATCCAAGAATTTGCTCCAACAGCACAATATTTAGAAGATGGCACAATTGTGGAGATGATGAAAAGCAGGCCAAGGTCAGACATCTATATCAACCTCCCTGCTCTCCAGAAGCTTGACACAATGCTCATAGAAATATTGGACACTTTCCAGGATACTGAATTTTGGTATGCAGAGAACATACCAGGGAATTCAAGTCGTTTACGTGGTGGAACCTCTTTTCGAAAAGTTGTTCCAAGGAAAGATGAGAAGTGGTGGCTGCCAGTTCCTTGTGTTCTTCCTGGTGGTCTCTCTGACAAGTCAAGAAAGCACCTGATTGAGAAAAGGGATTGTGCTAATCAAATTCATAAAGCAGCAATGGCAATAAACAGCAATGTTCTTGCAGAACTAGATATACCAGAAACATATATAGATAATCTTCCCAAGCTGAAATTCTATTGCCAAGTGATTGAGGATTCAATTAAATGTGACCCCATAAAGCAAATGTCTTGGAATTTTTCATCAAATTTCATAAGCCTTTTATGGAAGCCAATAATAGCAGCTGAGACTTGTAGGAAACGGGATGATATAGTTTCATTTAAGAGTGGAAGATCAAGTCTAGGGGACTCAATTTACCACTACATGTACAATGCAGACAAGTTCTCACCTGAACAACTTCTTGACTGTCTCAAAATAAGTTCTGAACATGAAGCACTTGAGCTAGCAGACAGGGTTGAATCATCAATGTACACGTGGAGACGCAAAGCTTGTCTGAGCCATTCGAAGTCATCATGGAGCAAAGTAAAGGATCTCATGGACGACACAGACTATAAGGACAAAAACTACACATTAGCTGAGAGAGCTGAGTCCTTATTGTTTTGCCTGAAGCAAAGATATCCTGAACTTTCACAAACTTCTTTGGATACATGCAAGATCCAATACAACCGGGATATAGGGAAAGCAGTACTAGAGAGTTATTCAAGAGTTTTGGAGGGCCTAGCTTTTAACATTGTTGCATGGATTGAAGATGTTCTTTATGTAGATAAAACAATGAGGAATCGAGATGTCTAG 1542 0.4073 MDKSSNFDENSDVGGYHPSPSNTPAFSTMSGDSFACCQTWTSSESETIDESSYASEPSPSRWRAKQDVLSKLGMKLRKHSMDDKLDACEDSAELEMMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQSLKLEPLKPEKKAMWKREMKVLLSVCDYIQEFAPTAQYLEDGTIVEMMKSRPRSDIYINLPALQKLDTMLIEILDTFQDTEFWYAENIPGNSSRLRGGTSFRKVVPRKDEKWWLPVPCVLPGGLSDKSRKHLIEKRDCANQIHKAAMAINSNVLAELDIPETYIDNLPKLKFYCQVIEDSIKCDPIKQMSWNFSSNFISLLWKPIIAAETCRKRDDIVSFKSGRSSLGDSIYHYMYNADKFSPEQLLDCLKISSEHEALELADRVESSMYTWRRKACLSHSKSSWSKVKDLMDDTDYKDKNYTLAERAESLLFCLKQRYPELSQTSLDTCKIQYNRDIGKAVLESYSRVLEGLAFNIVAWIEDVLYVDKTMRNRDV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01909 513 MobiDBLite consensus disorder prediction 1 24 - -
Cca07g01909 513 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 513 IPR038937 GO:0005085
Cca07g01909 513 MobiDBLite consensus disorder prediction 8 24 - -
Cca07g01909 513 ProSiteProfiles PRONE domain profile. 84 513 IPR005512 GO:0005085
Cca07g01909 513 Gene3D PRONE domain, subdomain 2 354 471 - -
Cca07g01909 513 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 93 307 IPR005512 GO:0005085
Cca07g01909 513 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 358 509 IPR005512 GO:0005085
Cca07g01909 513 Gene3D PRONE domain, subdomain 1 86 327 - -
Cca07g01909 513 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 1 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01909 Cca-Chr7 46177490 46181534 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01909 - - gmx:100806086 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01909 07 46177490 46181534 Cca07g01909 07 46177490 46181534 ECH
Cca07g01909 07 46177490 46181534 Cca01g02269 01 51023481 51027660 PCT