Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02269 ATGGACAATTCATCCAACTGTGATGAAAACTCTGATGTGGGGTACCAACCTTCACATTCTTCTGTGGATCAAAATGATCATTCAATCGCTGAAACTGCTGGATTCTCCCCATTCAGCGGCGATTCCTTCGCGTATTGCCGGAGTAACTCAGAGGTCTCTAACTTCTCTGAGCCTATTGATGACAATAGCTATGCCAGCGAGCCTTCACCTTCTCTATGGACACCTGTGAAACATGGAGCTAGTCAAGCTGCTCTTTCCAGGCTAGGAATGAAGCAGCACAGGCACTCATTGGATGATAAGTCTGATGACCTTGATCTCTTGGAGTTAGAGCTTGATATGATGAGGGAAAGATTTTCAAAACTTCTATTGGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTCTGCTCTGCAGTTACAATATCAAATTCAATCACCAATCTCTATGCTACTGTTTTTGGACAAAATTTGAAGTTGGAGCCTCTGAAGCCTGAGAAGAAGGCTATGTGGAAAAGAGAAATGAATTGTCTCCTATCAGTGTGTGATTATATAGTTGAATTCGCCCCAACTGCACAATATTTAGAAGATGGTACAATTGTGGAGATGATGACAAGTAGACCAAGATCAGATATTTATATCAACCTCCCAGCTCTGCAGAAGCTCGACACAATGCTCATTGAAATATTTGATAGTTTCCAGGATACTGAATTTTGGTATGCAGAGCAAGGGAGCAGCATATCAGGGAATTCAAATCGGTCACGTGCAGGCTCATTTCGAAGAATTGTTCCGAGGAAAGATGAGAAATGGTGGTTGCCCGTTCCTTGTGTCCACTCAGGGGGCCTCTCTGATAAGTCAAGGAAGCACTTGAGTGAGAAACGAGACTGCGCTAATCAAATTCATAAAGCAGCCATGGCAATAAATAGCAGTGTTCTTGCAGAGATGGATATTCCAGAATCATATATGGCAACTCTTCCCAAGAGTGGAAGAACAAGTCTGGGGGACACAATTTACCGCTACATGTATGCTGCAGACAAGTTTTCACCTGATCACCTTCTTGACTGTCTCAAAATAAGTTCTGAACATGAAGCACTTGAGCTGGCAGATAAGGTTGAGTCTTCAATGTTCACTTGGAGGCGCAAAGCTTGTCTGAGCCATTCAAAAACATCATGGAACAAAGTTAAGGATCTCATGGCTGACACAGACCGAAGTGACAAAAACTTCCTCTTAGCTGAGAGAGCCGAGACTTTGTTGTTTTGCTTGAAGCAAAGATATCCTGAACTTTCACAAACATCTTTAGACACATGCAAGATTCAATACAACCGGGATGTAGGGGAAGCAATATTGGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCATGCAGATAAAACAATGAGGAAGCAGATTGTATAG 1443 0.4255 MDNSSNCDENSDVGYQPSHSSVDQNDHSIAETAGFSPFSGDSFAYCRSNSEVSNFSEPIDDNSYASEPSPSLWTPVKHGASQAALSRLGMKQHRHSLDDKSDDLDLLELELDMMRERFSKLLLGEDMSGGGKGVCSAVTISNSITNLYATVFGQNLKLEPLKPEKKAMWKREMNCLLSVCDYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYINLPALQKLDTMLIEIFDSFQDTEFWYAEQGSSISGNSNRSRAGSFRRIVPRKDEKWWLPVPCVHSGGLSDKSRKHLSEKRDCANQIHKAAMAINSSVLAEMDIPESYMATLPKSGRTSLGDTIYRYMYAADKFSPDHLLDCLKISSEHEALELADKVESSMFTWRRKACLSHSKTSWNKVKDLMADTDRSDKNFLLAERAETLLFCLKQRYPELSQTSLDTCKIQYNRDVGEAILESYSRVLEGLAFNIVAWIEDVLHADKTMRKQIV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02269 480 ProSiteProfiles PRONE domain profile. 101 480 IPR005512 GO:0005085
Cca01g02269 480 Coils Coil 90 117 - -
Cca01g02269 480 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 110 476 IPR005512 GO:0005085
Cca01g02269 480 Gene3D PRONE domain, subdomain 1 105 345 - -
Cca01g02269 480 Gene3D PRONE domain, subdomain 1 346 480 - -
Cca01g02269 480 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g02269 480 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 1 324 - -
Cca01g02269 480 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 323 477 - -
Cca01g02269 480 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 323 477 IPR038937 GO:0005085
Cca01g02269 480 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 324 IPR038937 GO:0005085
Cca01g02269 480 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02269 Cca-Chr1 51023481 51027660 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02269 - - gmx:100785956 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02269 01 51023481 51027660 Cca01g02269 01 51023481 51027660 ECH
Cca07g01909 07 46177490 46181534 Cca01g02269 01 51023481 51027660 PCT