Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01883 ATGGGGGAAGAAGCAAAAAGGTATGCTGTTGTGACAGGAGCAAATAAAGGGATTGGTTTTGGGATGTGTGAGAAGTTGGCTTCAAGTGGGATTGTGGTGGTGCTAACAGCTAGAGATGAGAAAAGGGGTTTGAAAGCTGTTGAGAAACTGAAAGAATTTGGTCTCTCAGACTTCATAGTTTTTCATCAGCTTGATGTGAATGACCCTGCTAGTGTTGCTACCTTAGCTGATTTCATCAAAACCCAATTTGGGAAACTTGATATCTTGGTGAATAATGCAGCTGTTACTGGCGGCAAATTATTAGATGGTGATGCTTTACTTAGAAAGAGAAACGGTGAACAAATTGATTGGAGTGAAGTAGGGTATCAAACTTATGAGTTAGCTGAACAATGTGTGGAAACAAACTTCTATGGTGTGGAAAGGGTAACTGAAGCTCTTGTTCCCCTTCTCCAGCTATCCATTTCTCCAAGAATTATCAACATTTCCTCCAGAGCAGGGCTCTTGAAGAATATACCAAATGAGTGGGCTAGAAGAATGTTCAGTGACATTGAAAACCTTACAAGAGAAAAAATTGATGGGGTACTTAAAGAGTTTCAGAAAGATTTCAAAGAGGGGTCATTGGAGAACAAAGGTTGGCCAGCTTTTGCTTCTGCTTACACAATGTCAAAAGCGGCTTTGAATGCTTACACGAGGGTAATGGCCAAGAAATACCCTCATTTTCACATAAACTCTGTGTGCCCTGGCTTTGTCAAGACTGATATGAACAACAACACTGGACAATTAAGCATTGATGAAGGAACTCAAACTCCTTTGATGTTGGCACTGATGCCAAATAGTGTTCCTTCTGGATGTTTCTTTAATCAGGGAGAAGTAATACCCTTTTGA 885 0.4045 MGEEAKRYAVVTGANKGIGFGMCEKLASSGIVVVLTARDEKRGLKAVEKLKEFGLSDFIVFHQLDVNDPASVATLADFIKTQFGKLDILVNNAAVTGGKLLDGDALLRKRNGEQIDWSEVGYQTYELAEQCVETNFYGVERVTEALVPLLQLSISPRIINISSRAGLLKNIPNEWARRMFSDIENLTREKIDGVLKEFQKDFKEGSLENKGWPAFASAYTMSKAALNAYTRVMAKKYPHFHINSVCPGFVKTDMNNNTGQLSIDEGTQTPLMLALMPNSVPSGCFFNQGEVIPF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01883 294 PRINTS Glucose/ribitol dehydrogenase family signature 219 238 IPR002347 -
Cca07g01883 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Cca07g01883 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Cca07g01883 294 PRINTS Glucose/ribitol dehydrogenase family signature 150 166 IPR002347 -
Cca07g01883 294 PRINTS Glucose/ribitol dehydrogenase family signature 238 255 IPR002347 -
Cca07g01883 294 Gene3D - 3 294 - -
Cca07g01883 294 Pfam Enoyl-(Acyl carrier protein) reductase 209 259 - -
Cca07g01883 294 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 1 294 - -
Cca07g01883 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 294 - -
Cca07g01883 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 286 IPR036291 -
Cca07g01883 294 CDD carb_red_PTCR-like_SDR_c 7 294 IPR045313 GO:0016616
Cca07g01883 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 206 234 IPR020904 GO:0016491
Cca07g01883 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 IPR002347 -
Cca07g01883 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Cca07g01883 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 238 IPR002347 -
Cca07g01883 294 Pfam short chain dehydrogenase 8 169 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01883 Cca-Chr7 45830184 45833397 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01883 10 260 Acyl Lipid Metabolism Gene Families AT1G24360 26.984 6.30e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01883 K15095 - gmx:100789626 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01883 07 45830184 45833397 Cca07g01883 07 45830184 45833397 ECH
Cca07g01883 07 45830184 45833397 Cca01g02223 01 50405415 50408778 PCT