Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02223 ATGGGAGAGGAAGCAAAAAGGTATGCGGTAGTGACAGGAGCTAACAAGGGGATTGGTTATGGAATATGCAAGAAATTGGCGTTGAATGGAGTTGTGGTGATACTAACAGCAAGAAATGAGAAAAGGGGTTTGGATGCGGTGGAAAGATTGAAAGATTTTGGCCTCTCAGATCTTCTTGTTTTTCACCAACTTGATGTTACTGACCCTTCCAGTGTTGCTTCTTTGGCACAATTCATCAAAACCCGATTTGGAAAACTTGACATCTTGGTGAACAATGCAGGTGTTCCAGGAGGAATAGTAAATGGAGAGAATGTTCTTAAAAAGAAAAGGGGTGAATTATCAGATTGGAATATAATAGTACCTCAAAGTTATGAGTTGGCGGAAGAATGTGTTGAAATCAACTTCTTTGGTGCGGAGAGAGTGACTGAAGCTCTTCTACCCCTTCTTCAACTATCAACTTCACCCAGGATTGTCAATGTTTCCTCTAGAAGAGGAGTGTTGAAGAATATACCAAATGAGTGGGCAAGAGGAGTGATGAGTGACATTGAAAACCTTACAAACGAAAAGCTTCATGGGGTGCTTAGGGAGTTTCTGAAAGATTACAAAGAAGGGTCATTGGAATCCAAGAACTGGCCACCTGTTCTATCTGGTTACACCATGTCAAAAAATGCCTTAAATGCCTACACAAGAATGCTGGCTAACAAGTTCCCTCGTTTTCGCATCAATTGTTTGTGCCCTGACTTTGTCAAGACTGATCTGAACCAGAATGTAGGGTTTCTAACCATTGATGAAGGTGCTGAGTGTCCTGCCACCCTTGCATTGTTGCCTGATAATGGTCCTTCTGGTCTCTTTTTCTTAAGGGATCAAGTTCTTTCCTTTTACTGA 885 0.4158 MGEEAKRYAVVTGANKGIGYGICKKLALNGVVVILTARNEKRGLDAVERLKDFGLSDLLVFHQLDVTDPSSVASLAQFIKTRFGKLDILVNNAGVPGGIVNGENVLKKKRGELSDWNIIVPQSYELAEECVEINFFGAERVTEALLPLLQLSTSPRIVNVSSRRGVLKNIPNEWARGVMSDIENLTNEKLHGVLREFLKDYKEGSLESKNWPPVLSGYTMSKNALNAYTRMLANKFPRFRINCLCPDFVKTDLNQNVGFLTIDEGAECPATLALLPDNGPSGLFFLRDQVLSFY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02223 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 293 - -
Cca01g02223 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Cca01g02223 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Cca01g02223 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Cca01g02223 294 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Cca01g02223 294 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Cca01g02223 294 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Cca01g02223 294 PANTHER OXIDOREDUCTASE-RELATED 1 293 - -
Cca01g02223 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Cca01g02223 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Cca01g02223 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Cca01g02223 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 278 IPR036291 -
Cca01g02223 294 Gene3D - 3 293 - -
Cca01g02223 294 Pfam short chain dehydrogenase 8 167 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02223 Cca-Chr1 50405415 50408778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02223 10 258 Acyl Lipid Metabolism Gene Families AT1G24360 20.635 3.73e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02223 K15095 - gmx:100802560 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02223 01 50405415 50408778 Cca01g02223 01 50405415 50408778 ECH
Cca07g01883 07 45830184 45833397 Cca01g02223 01 50405415 50408778 PCT