Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01879 ATGTGGAAGGTTGCGCGATTCGCCGCCTCCAGATCGCGGCGGTTCTCGACGGCGATTCCCGGTCCATGCAAGGTCCACAAACGCGGCACTGATATCCTCCACGATCCTTGGTTCAACAAGGATACTGGGTTTCCTTTAACTGAAAGGGATCGATTGGGGCTTCGGGGTCTCCTTCCTCCTCGTGTCATTTCATTTGAGCATCAATATGATCGCTTTATGGATTCATATAGATCTTTGGAGAAGAATACACACGGCCAATCTGATAAATTTGTTTCTTTAGCAAAATGGAGGATCTTAAATAGACTGCATGACAGAAACGAGACTCTGTATTACAGAGTTCTTATTGATAACATCAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGGTTAGTGTGTCAAAATTATTCAGGGTTATTTAGACGCCCGCGAGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCAAGAGGTAGACATGATTGTGCTGACAGATGGTAGTCGTATTCTTGGCTTGGGTGACCTTGGAGTTCAGGGCATTGGAATACCTATAGGAAAACTTGACATGTATGTTGCTGCTGCTGGTATCAACGCACAAAGAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTGGACGATCCCCTTTATTTAGGAGTTCGACAACCTAGGTTGGAAGGTGAAGAGTATTTATCAATTGTAGATGAATTCATGGAAGCTGTTTATGCTCGATGGCCCAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAGACCCTGAACCGATATCGAAAAAAGTTTTGTATGTTTAATGATGATATACAGGGCACAGCAGGTGTTGCACTTGCTGGACTATTGGGAACTGTAAGAGCCCAAGGTCTACCACTGTCTGATATTTTGAAGCAAAAGATAGTTGTGGTTGGAGCTGGAAGTGCAGGGCTTGGTGTTCTTAACATGGCTGTCCAGGCTGTTTCAATGATGTCAGGGTCTGCTCCCAAAAGTCAATTTTTCTTGATTGATAAAGATGGCCTTGTCACGACAGAAAGGAGCAATCTGGATCCAGCTGCAGTTCCATTTGCCAAAAATCCAAGAGATCTTGAAGGGCTTACAGAGGGTGCTAGTATTGTTGAAGTGGTTAAGAAGGTTAAGCCACACGTGCTCCTTGGATTGTCTGGAGTTGGTGGTGTTTTCAATGCGGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAATCCCACCATGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCTGGAGAAAATATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGACAAGTTGGCCACGTAAATCAAGCCAACAACATGTACCTGTTCCCAGGGATTGGTTTGGGGACACTTCTATCAGGTGCTCATCATATAACGGATGGAATGTTGCAAGCAGCTGCTCAATGCCTTGCTTCATACATGACAGATGAAGATGTCCAAAAAGGAATCTTGTATCCATCCATTGACTGTATACGAAATGTTACAGCAGAGGTTGGGGCTGCTGTTCTACGTGCAGCAGTTGCCGAAGGGCAGGCTGAAGGACAAGGTGATGCAGGCGTCAAGGAACTTGAAAACATGTCAAAAGAGGATAGCGTGGAATATGTTAGAGGCAATATGTGGTACCCCGAGTATTGTCCCCTTGTTCAAGAAAAATAA 1794 0.4376 MWKVARFAASRSRRFSTAIPGPCKVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYDRFMDSYRSLEKNTHGQSDKFVSLAKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINAQRILPVMLDVGTNNQKLLDDPLYLGVRQPRLEGEEYLSIVDEFMEAVYARWPKAIVQFEDFQMKWAFETLNRYRKKFCMFNDDIQGTAGVALAGLLGTVRAQGLPLSDILKQKIVVVGAGSAGLGVLNMAVQAVSMMSGSAPKSQFFLIDKDGLVTTERSNLDPAAVPFAKNPRDLEGLTEGASIVEVVKKVKPHVLLGLSGVGGVFNAEVLKAMRESVSTKPAIFAMSNPTMNAECTAIEAFSHAGENIVFASGSPFENVDLGNGQVGHVNQANNMYLFPGIGLGTLLSGAHHITDGMLQAAAQCLASYMTDEDVQKGILYPSIDCIRNVTAEVGAAVLRAAVAEGQAEGQGDAGVKELENMSKEDSVEYVRGNMWYPEYCPLVQEK 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01879 597 Gene3D - 291 597 - -
Cca07g01879 597 ProSitePatterns Malic enzymes signature. 289 305 IPR015884 GO:0004471
Cca07g01879 597 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 293 594 IPR036291 -
Cca07g01879 597 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 14 292 IPR046346 -
Cca07g01879 597 PANTHER MALIC ENZYME 8 593 - -
Cca07g01879 597 SMART malic_2 103 283 IPR012301 GO:0004471
Cca07g01879 597 Gene3D - 27 290 IPR037062 GO:0004471
Cca07g01879 597 PIRSF ME 4 596 IPR001891 GO:0004470|GO:0004471
Cca07g01879 597 Pfam Malic enzyme, NAD binding domain 293 552 IPR012302 GO:0051287
Cca07g01879 597 CDD NAD_bind_1_malic_enz 293 588 - -
Cca07g01879 597 PRINTS Malic enzyme signature 109 133 IPR001891 GO:0004470|GO:0004471
Cca07g01879 597 PRINTS Malic enzyme signature 169 198 IPR001891 GO:0004470|GO:0004471
Cca07g01879 597 PRINTS Malic enzyme signature 205 227 IPR001891 GO:0004470|GO:0004471
Cca07g01879 597 PRINTS Malic enzyme signature 264 282 IPR001891 GO:0004470|GO:0004471
Cca07g01879 597 PRINTS Malic enzyme signature 289 305 IPR001891 GO:0004470|GO:0004471
Cca07g01879 597 PRINTS Malic enzyme signature 323 339 IPR001891 GO:0004470|GO:0004471
Cca07g01879 597 PRINTS Malic enzyme signature 429 445 IPR001891 GO:0004470|GO:0004471
Cca07g01879 597 Pfam Malic enzyme, N-terminal domain 103 283 IPR012301 GO:0004471
Cca07g01879 597 PANTHER MALIC ENZYME-RELATED 8 593 - -
Cca07g01879 597 SMART Malic_M_2 293 553 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01879 Cca-Chr7 45793002 45800323 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01879 K00028 - gmx:100795823 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01879 07 45793002 45800323 Cca07g01879 07 45793002 45800323 ECH
Cca07g01879 07 45793002 45800323 Cca01g02217 01 50303996 50311320 PCT