Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02217 ATGTGGAAACTCGCGCGTCTCGCTGCCGCCTCCAACGTCGCCCGATCGCGCCGCTTCTCCGCCGCGATTCCCGGTCCCTGCATTGTTCACAAACGCGGTGCTGACATACTCCACGATCCCTGGTTCAACAAGGATACTGGGTTTCCGTTGACTGAAAGGGATAGATTGGGGCTTCGGGGCCTCTTACCTCCTCGTGTTATATCATTTGAGCAGCAATATGATCGCTTTATGAATTCATTCCGATCTTTGGAGAATAATACTCAAGGGCAACCAGATAAAGTTGTTTCCCTAGCAAAATGGAGGATCTTAAATAGACTGCATGACAGGAACGAGACTCTGTATTACAGAGTTCTTATTGATAATATTAAGGAGTTTGCTCCAATAATATATACTCCAACAGTTGGATTAGTGTGTCAAAATTATTCAGGGTTATTTAGACGTCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCACCAGGTTGACATGATTGTCTTAACAGATGGAAGTCGAATTCTCGGCTTAGGTGACCTTGGAGTTCAGGGAATTGGAATTCCCATAGGGAAACTTGATGTGTACGTTGCTGCTGCTGGCATCAACCCACAAAGAATACTTCCAGTTATGCTGGATGTTGGCACCAACAATCAAAAGCTACTTGACGATCGCCTTTATTTAGGACTTCGACAACCAAGGTTGGAAGGTGAAGAGTATCTATCAATTGTAGATGAATTCATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGGAAAGATATCATAAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACTGCTGGTGTTGCACTTGCTGGATTGTTGGGAACTGTAAGAGCTCAAGGCCGATCATTGACTGATTTTGTGAACCAAAAGATAGTTGTGGTTGGAGCTGGGAGTGCAGGGCTTGGGGTTCTGAAAATGGCCATCCAGGCAGTCGCAAAGATATCTGGGTGCAGTGAATTAGCTGCCAAAAGCCAGTTCTATTTGATTGATAAAGATGGTCTAGTCACAACAGAAAGGAAAAATCTAGATCCAGCTGCAGCTCCATTTGCTAAAACTCCAAGAGATATAGAGGGGCTCAGTGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTTGGTTTGTCTGGCGTTGGTGGTATTTTCAATGAGGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAACCCCACCATGAATGCTGAGTGCACTGCTATTGATGCTTATAAGCATGCTGGGGAAAATATAGTGTTTGCAAGTGGCAGCCCTTTTGAAAATGTGGATCTTGGTAATGGGAAAGTGGGCCATGTAAATCAAGCAAACAACATGTACCTGTTCCCAGGAATCGGTTTGGGAACTCTTCTGTCAGGTGCTCACCTTATAACAGATGGAATGTTACAGGCAGCTGCCGAATGCCTTGCTTCATACATGGCTGAGGAAGATATCTTAAAAGGAGTTTTGTATCCATCCGTTGATAGCATACGGGATGTTACGGCAGAGGTTGGGGCTGCTGTGCTTCGAGCAGCAGTCGAAGAAGAACTGGCAGAAGGACATGGTGATGTGGGGCCCAAAGAACTTTCCCATATGTCAAAAGATGAGACTGTGGAGTACGTCCGAAGCAATATGTGGTATCCTGTGTATTCTCCTCTAGTTCATGAAAAATGA 1815 0.4457 MWKLARLAAASNVARSRRFSAAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYDRFMNSFRSLENNTQGQPDKVVSLAKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLDDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYHKRFCMFNDDIQGTAGVALAGLLGTVRAQGRSLTDFVNQKIVVVGAGSAGLGVLKMAIQAVAKISGCSELAAKSQFYLIDKDGLVTTERKNLDPAAAPFAKTPRDIEGLSEGASIIEVVKKVKPHVLLGLSGVGGIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTAIDAYKHAGENIVFASGSPFENVDLGNGKVGHVNQANNMYLFPGIGLGTLLSGAHLITDGMLQAAAECLASYMAEEDILKGVLYPSVDSIRDVTAEVGAAVLRAAVEEELAEGHGDVGPKELSHMSKDETVEYVRSNMWYPVYSPLVHEK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02217 604 Pfam Malic enzyme, NAD binding domain 297 559 IPR012302 GO:0051287
Cca01g02217 604 PRINTS Malic enzyme signature 113 137 IPR001891 GO:0004470|GO:0004471
Cca01g02217 604 PRINTS Malic enzyme signature 173 202 IPR001891 GO:0004470|GO:0004471
Cca01g02217 604 PRINTS Malic enzyme signature 209 231 IPR001891 GO:0004470|GO:0004471
Cca01g02217 604 PRINTS Malic enzyme signature 268 286 IPR001891 GO:0004470|GO:0004471
Cca01g02217 604 PRINTS Malic enzyme signature 293 309 IPR001891 GO:0004470|GO:0004471
Cca01g02217 604 PRINTS Malic enzyme signature 327 343 IPR001891 GO:0004470|GO:0004471
Cca01g02217 604 PRINTS Malic enzyme signature 436 452 IPR001891 GO:0004470|GO:0004471
Cca01g02217 604 PANTHER MALIC ENZYME 1 600 - -
Cca01g02217 604 CDD NAD_bind_1_malic_enz 297 595 - -
Cca01g02217 604 Gene3D - 295 604 - -
Cca01g02217 604 Gene3D - 31 294 IPR037062 GO:0004471
Cca01g02217 604 SMART Malic_M_2 297 560 IPR012302 GO:0051287
Cca01g02217 604 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 297 601 IPR036291 -
Cca01g02217 604 PANTHER MALIC ENZYME-RELATED 1 600 - -
Cca01g02217 604 SMART malic_2 107 287 IPR012301 GO:0004471
Cca01g02217 604 PIRSF ME 6 603 IPR001891 GO:0004470|GO:0004471
Cca01g02217 604 Pfam Malic enzyme, N-terminal domain 107 286 IPR012301 GO:0004471
Cca01g02217 604 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 20 296 IPR046346 -
Cca01g02217 604 ProSitePatterns Malic enzymes signature. 293 309 IPR015884 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02217 Cca-Chr1 50303996 50311320 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02217 K00028 - gmx:100806545 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02217 01 50303996 50311320 Cca01g02217 01 50303996 50311320 ECH
Cca07g01879 07 45793002 45800323 Cca01g02217 01 50303996 50311320 PCT