Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01877 ATGGCTTCTTTTGCTACTCTTCATGGCCTTCACAACACCCCTCTTCCACGATCTCAATTCCTAGGCCAAGATCACCACTTCCCTCTCAAGCCACCACCTTCCACAGTGCATCATCACAGAACAACACCACCACGTGCCAAGTTCAACATGTTGGAATTCTTGGGGGGAAGAGGACTGTGCAACGGGGAAAAGGGTCTTCAGCAGGAGCTGAAGAAGCAAGTTGTTGTGGATCCACCACCTTCATCAGAAGAAGTGGCATCAAGTGGAAAAGAGCAAGAAGATGAAGGTGGTGAAGGTGTTAAGGTTCCAGATGATGGTTTTGAGAAAGAAATGATGGGGCTAACTGGGGGGTTTCCTGGGGGTGAGAAAGGGTTGATAAAGTTCATTGAGAAAAACCCTCCTCCAAAACCACCTACTGCTTTAACCATTTCAGTTTTAGAGAAGGCTTTGTGA 453 0.4724 MASFATLHGLHNTPLPRSQFLGQDHHFPLKPPPSTVHHHRTTPPRAKFNMLEFLGGRGLCNGEKGLQQELKKQVVVDPPPSSEEVASSGKEQEDEGGEGVKVPDDGFEKEMMGLTGGFPGGEKGLIKFIEKNPPPKPPTALTISVLEKAL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01877 150 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC 1 136 IPR021659 GO:0009767
Cca07g01877 150 MobiDBLite consensus disorder prediction 1 41 - -
Cca07g01877 150 MobiDBLite consensus disorder prediction 73 106 - -
Cca07g01877 150 MobiDBLite consensus disorder prediction 87 106 - -
Cca07g01877 150 PANTHER NADH DEHYDROGENASE-LIKE COMPLEX, SUBUNIT S-RELATED 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01877 Cca-Chr7 45772730 45773586 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01877 K00345 - gmx:100776479 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01877 07 45772730 45773586 Cca01g02214 01 50275661 50276859 PCT