Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01841 ATGGGTTTGTTTTCTGGGATTTTTCTGGGGATGGCATTGGGCATAGCATTGATGGCTGGTTGGCAACGCATGATGACATACCGTAGCGCCAAGAGAATAGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGATAATTTTCCTGACTGGGTATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAAGTTTGGCCATTTGTGGCAGATGCAGCAACATTGGTGATAAGAGAATCTGTTGAACCACTATTGGAAGAGTATAGACCTCCTGGAATTACTTCATTGAAGTTTAGCAAGCTGTCTCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTCTTGGCTGTTGAAGCTGCCCTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTTCAGGTTTTCACCATTATCCGTGTTATATTCCAACTATGTGATGAGATCCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCGAAGCCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGAAGCTTGACGGCACTTCCAGGAATTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACCGATATGCTCCAATGGCCTCATAGGATTGTCGTTCCTCTTGGGGGTATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAACGCTTAGAGTGAATATAATAAAAGCGAATGATCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGTTGTTTTGCATATTCGACCACTTTTTAAGGTTAAAACGAAGGTTATTGACAACAACTTGAATCCTGTTTGGAATGAGGTATTTGACTTGATTGCAGAGGACAAGGAGACCCAGTCACTCGTTCTCGAGGTTTTGGACAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCACTTAATGACCTGGAAGCAGAAACTGCAAAAGAATTTGAATTGAGGCTGTTGCCATCACTTGACACACTGAAAGTTAAAGATAAAAAGGATCGAGGAACCTTGACAATAAAGACATTTTATCACCAGTTTAACAAGGAAGAACAGTTCGTTGCACTAGAAGCAGAGAAAAAGATACTTGAAGAACGGAAGAAACTTAAAGAGGAGGGAGTTATAGGAACTACAATGGATGCACTAGATGGAGCAGCATCAGTAGTTGGGTCCGGTGTGGGAATGGTCGGGTCCGGTGTGGGAATGGTTGGGTCCGGTGTTGTTACTGGTGCTGGAATGGTGGGCAGTGGAATTGGTGCCGGAGCCGGAATGGTGGGCAGTGGAATTGGTGCTGGTGCTGGGATGGTGGGCAGTGGAATTGGTGCTGGTGCTGGGATGGTGGGCAGTGGAATTGGTGCTGGTGCTGGGATGGTGGGCAGTGGAATCGGCGCTGGTGCTGGGCTTGTTGGTAGTGGCATTGGTGCTGGAGTTGGTTTTGTTGGTAGTGGTCTTGGTGCTGTTGGTAGTGGACTGAGCAAAGCAGGAAAGTTCATGGGAAGGACAATCACAGGGCAAGGTGGATCCAAAAGGAGTGGTTCATCTACTCCTATCAATACGGAGGAGGCTGGTGGTGGTGCAAAACCTCTGCTGCAGTAA 1731 0.4477 MGLFSGIFLGMALGIALMAGWQRMMTYRSAKRIAKAADIKLLGSLNRDDLKKICGDNFPDWVSFPVYEQVKWLNKQLSKVWPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEAALVASIPIQLKDLQVFTIIRVIFQLCDEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGTLRVNIIKANDLKNMEMIGKSDPYVVLHIRPLFKVKTKVIDNNLNPVWNEVFDLIAEDKETQSLVLEVLDKDIGQDKRLGIVKLPLNDLEAETAKEFELRLLPSLDTLKVKDKKDRGTLTIKTFYHQFNKEEQFVALEAEKKILEERKKLKEEGVIGTTMDALDGAASVVGSGVGMVGSGVGMVGSGVVTGAGMVGSGIGAGAGMVGSGIGAGAGMVGSGIGAGAGMVGSGIGAGAGMVGSGIGAGAGLVGSGIGAGVGFVGSGLGAVGSGLSKAGKFMGRTITGQGGSKRSGSSTPINTEEAGGGAKPLLQ 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01841 576 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 481 - -
Cca07g01841 576 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 506 566 - -
Cca07g01841 576 ProSiteProfiles C2 domain profile. 247 365 IPR000008 -
Cca07g01841 576 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Cca07g01841 576 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 481 IPR045050 GO:0008289
Cca07g01841 576 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 506 566 IPR045050 GO:0008289
Cca07g01841 576 SMART C2_3c 265 362 IPR000008 -
Cca07g01841 576 CDD C2 266 354 - -
Cca07g01841 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Cca07g01841 576 Pfam C2 domain 264 360 IPR000008 -
Cca07g01841 576 MobiDBLite consensus disorder prediction 549 565 - -
Cca07g01841 576 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Cca07g01841 576 MobiDBLite consensus disorder prediction 546 576 - -
Cca07g01841 576 Gene3D C2 domain 259 418 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01841 Cca-Chr7 45066108 45078432 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01841 249 360 Lipid Metabolism Gene Families AT3G61300 32.743 8.75e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01841 - - gmx:100785209 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01841 07 45066108 45078432 Cca01g02140 01 49082970 49097351 PCT