Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02140 ATGATAAATCTCATTCCAATTGGCGTTCATCCTCTAAAGGAAAGGTGGTGTTTGGAATCTGGGAAAATGGGTTTGATTTCTGGGATTTTTATGGGCGTGTTATTTGGCATCGCATTGATGGCTGGATGGGCGCGCATGATGAGGTACCGAAGTGCCAAGCGAATTTCAAAGGCAGCTGACATTAAACTCCTTGCATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGGAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCAGCAACTTTGGTGATCAGAGAATCTGTTGAACCACTACTAGAAGAGTACAGACCTCCTGGCATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCCCCAAAAATTGAAGGTATTCGTGTTCAGAGCCTTACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATTCAGCTGAAAGATCTTCAGGTTTTCACCATCGTCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTAGCTCTGCTAGCTGAGCCAAAGCCCAGAATTGATTATACTCTGAAAGCTGTTGGCGGAAGTTTAACGGCTATTCCAGGAATTTCAGATATGATTGATGATACTGTGGACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGAATTGTGGTTCCACTTGGTGGTATTCCTGTTGATATCAGTGAACTGGAGCTTAAACCTCAGGGAAAACTTGCAGTGACTGTAGTGAAAGCGACTGGTTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTCGTGCATATTCGACCATTATTTAAGTATAAAACCAAGGTTGTTGATAACAACTTGAATCCTACTTGGGATGAGACATTTCAGTTGATTGCAGAAGACAAAGAGACCCAATCACTCATTCTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGCAAAGTTACCCCTTATTGATCTAGAAACACAAACTGAAAAGGAGATTGAATTGAGGCTGCTGCCATCACTTGATACACTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAGTAAAGGTCTTTTACTATCAGTTTAACAAGGAAGAGCAGCTGGAAGCACTAGAAGCAGAAAAAAAGATACTAGAAGAAAGAAAGAGACTGAAAGAAGCAGGAATCATAGGAAGCACAAGGGATGCACTAGATGGAGCAGTATCAGTGGTAGGGTCTGGTGTTGGACTAGTTGGTACTGGCGTTGTTGCCGGTGCCGGCCTTGTGGGAAGTGGAATTGGTGCCGGAGCCGGGCTTGTTGGCAGTGGCATCGGTGCTGGAGCTGGGCTTGTTGGCAGTGGTCTTGGAGCCTTTAGTAGTGGATTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGTCATAGTGGATCCAAAAAGAGTGGTTCTTCAACTCCAGTCAATAATGCACAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA 1641 0.4321 MINLIPIGVHPLKERWCLESGKMGLISGIFMGVLFGIALMAGWARMMRYRSAKRISKAADIKLLASLNRDDLKKICGDNLPEWISFPVYEQVKWLNKELTKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVDSIVTDMLQWPHRIVVPLGGIPVDISELELKPQGKLAVTVVKATGLKNMEMIGKSDPYVVVHIRPLFKYKTKVVDNNLNPTWDETFQLIAEDKETQSLILEVFDKDIGQDKRLGIAKLPLIDLETQTEKEIELRLLPSLDTLKVKDKKDRGTLTVKVFYYQFNKEEQLEALEAEKKILEERKRLKEAGIIGSTRDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGIGAGAGLVGSGIGAGAGLVGSGLGAFSSGLSKAGKFMGRTITGHSGSKKSGSSTPVNNAQENGGGAKPL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02140 546 MobiDBLite consensus disorder prediction 518 546 - -
Cca01g02140 546 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 88 271 IPR031468 GO:0008289
Cca01g02140 546 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 23 541 IPR045050 GO:0008289
Cca01g02140 546 PRINTS C2 domain signature 303 315 IPR000008 -
Cca01g02140 546 PRINTS C2 domain signature 328 341 IPR000008 -
Cca01g02140 546 PRINTS C2 domain signature 350 358 IPR000008 -
Cca01g02140 546 SMART C2_3c 287 384 IPR000008 -
Cca01g02140 546 Coils Coil 413 440 - -
Cca01g02140 546 MobiDBLite consensus disorder prediction 520 538 - -
Cca01g02140 546 CDD C2 288 382 - -
Cca01g02140 546 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 90 270 IPR039010 -
Cca01g02140 546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 284 414 IPR035892 -
Cca01g02140 546 Gene3D C2 domain 281 439 IPR035892 -
Cca01g02140 546 Pfam C2 domain 286 382 IPR000008 -
Cca01g02140 546 ProSiteProfiles C2 domain profile. 269 387 IPR000008 -
Cca01g02140 546 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 23 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02140 Cca-Chr1 49082970 49097351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02140 282 378 Lipid Metabolism Gene Families AT3G61300 30.928 9.65e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02140 - - gmx:100777838 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01841 07 45066108 45078432 Cca01g02140 01 49082970 49097351 PCT