Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01825 ATGGCCATGCTCAAGACTCTCTGCTTCAGAGGAACTGCGTTTACCGTTTGCCCCTCCAATGTCTCCAATCATACAAACACAAGGACCTCATGTTGGAAGCCAGTACAAGCAGCTGTGAAACCTAGTTTCCACCTCCCAATGCGCAGTTTTGAGTTGAAAAATAGGACTTCTGCAGAGGAAATAAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCAGATGGTCGATTTGATCTTGAAGCATATGATGACCTGGTGAATATGCAGATTGGACAAGGAGCTGAAGCTGTTATTGTTGGTGGGACAACCGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATCATGCTTATTGCTCACACTGTCAACTGTTATGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAATTCCACCAGGGAAGCAATTCATGCCACCGAGCAGGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGAAAAACCTCTTTGGATGGCATGGTTGCTCACTTTCAAAGTGTGCTTCCCATGGGGCCAACAATAATCTATAATGTGCCTTCACGGACGGGCCAAGACATTCCTCCACATGTAATTCTATCCTTAGCTGAAAGTGCTAACTTGGCTGGTGTCAAGGAGTGTGTGGGAAATGAGCGGATCAAGCAGTATACAGATAATGGAATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAACCTGGTTCCTGGTTTAATGCGAGAACTCATGTTTGGTGGCCTAAACCCTACACTAAATTCAAAGCTCTTACCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGTTTGAATACTGCTCTTGCTCAACTTGGGGTTGTCAGGCCTGTTTTTCGGCTACCGTTTGTACCCCTCCCTGTGGAGAAAAGGGTAGAGTTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGATGTTGAAGTTCTTGAAGATGATGACTTTTTCTTGGTTAGTCGTTATTAA 1092 0.4432 MAMLKTLCFRGTAFTVCPSNVSNHTNTRTSCWKPVQAAVKPSFHLPMRSFELKNRTSAEEIKCLRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEAVIVGGTTGEGQLMSWEEHIMLIAHTVNCYGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLPMGPTIIYNVPSRTGQDIPPHVILSLAESANLAGVKECVGNERIKQYTDNGIVVWSGNDDQCHDARWGYGATGVISVASNLVPGLMRELMFGGLNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVEKRVEFANLVKEIGREHFVGNKDVEVLEDDDFFLVSRY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01825 363 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Cca07g01825 363 SUPERFAMILY Aldolase 66 338 - -
Cca07g01825 363 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Cca07g01825 363 SMART DHDPS_2 62 339 IPR002220 GO:0016829
Cca07g01825 363 CDD DHDPS 65 335 IPR005263 GO:0008840|GO:0009089
Cca07g01825 363 Gene3D Aldolase class I 57 363 IPR013785 -
Cca07g01825 363 Pfam Dihydrodipicolinate synthetase family 64 337 IPR002220 GO:0016829
Cca07g01825 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE 22 363 IPR002220 GO:0016829
Cca07g01825 363 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 66 336 IPR005263 GO:0008840|GO:0009089
Cca07g01825 363 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Cca07g01825 363 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Cca07g01825 363 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Cca07g01825 363 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
Cca07g01825 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE-RELATED 22 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01825 Cca-Chr7 44878050 44881715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01825 K01714 - gmx:100788930 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01825 07 44878050 44881715 Cca07g01825 07 44878050 44881715 ECH
Cca07g01825 07 44878050 44881715 Cca01g02123 01 48744374 48747324 PCT