Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01761 ATGGGCACAAAGTTGAGTCTTTTGTGGTGTGTTTGGGTTTTTTCGCTGTTGGGGTGTTGTTGGGGCAGGTTTGTGGTGGAGAAGAACAGTTTGAAAGTCACTACTCCCAAATCGTTGAAGGGTGCATATGAGTGTGCAATTGGGAATTTTGGGGTTCCCAAGTATGGAGGAACATTGGTTGGGTCTGTGATGTACCCGAAGGTGAATCAGAAAGGGTGCACAAACTTCAGTGATGTCGGTGTCTCGTTTCAGTCCAAGCCAGGAGGGTTTCCCACCTTTCTTCTTGTTGATCGTGGAGATTGCTTCTTCACTTTGAAGGCATGGAATGCACAGAATGGTGGTGCAGCAGCTATTCTTGTAGCTGATGACAAGGCAGAGACATTGATCACTATGGACATTCCTGAAGAAGGGAAAGATGCAAAAGAAGATTATTTGGAAAAGATTAGTATTCCTTCTGCTCTTATCAGCAAAACCTTGGGGGATAGCATCAAGCAGGCTCTCTCTGATGGGGAGATGGTTAACATAAATCTTGATTGGAGAGAGGCTCTTCCACATCCTGATGATAGAGTTGAGTATGAGTTGTGGACAAATAGCAACGACCAGTGCGGGCCAAAGTGTGACGGTCTAATTAATTTTCAGAAGGACTTTAAAGGGGTAGCTCAGCTACTTGAGAAGAAAGGGTTCACTCAGTTTACCCCACGCTACATAACTTGGTTTTGTCCCGAGGCATTTATCTTGAGCAAACAGTGCAAGTCCCAGTGCATAAACAATGGAAGGTATTGTGCTCCAGATCCCGAGCAAGATTTCAGTAGAGGATATGATGGAAAAGATGTTGTTGTTCAAAACTTGCGCCAAGCTTGCTTCTTTAAAGTGGCAAATGAAACTGGAAAGCCTTGGAAATGGTGGGACTATGTGACTGACTTTTCAATTCGTTGCCCCATGAGAGAGAATAAGTACACAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGATGTTGATCTGAAGAAGATTAAAGACTGTGTTGGAGATCCCCATGCAGATGTTGAAAATCCTGTTCTTAAGGCTGAACAGGCTGCACAGATTGGTAAAGGCTCTCGGGGTGATGTTACCATACTGCCTACTCTAGTTATAAACGACAGACAGTATAGAGGTAAGTTGTCAAGACCTGCTGTTCTCAAGGCAATCTGTGCAGGTTTCCAAGAGACCACTGAACCATCAATTTGCTTAACTCCAGAATTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGAAGGACAAAACTTCAAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGCGAATGCCCTATTGTGCAAAATGTAAAGTTTTTTGGAGATGGATATACCCACTGTGAAGCTTCAGGAACCTTGAGTTGTGACTTCCACAATGGTGGTTGTTGGAAGGGAGAACAAGGTGGCAGGGCTTACTCGGCTTGTCTTGATGATTATAGAAAAGGTTGTACATGTCCACCTGGGTTTAGAGGTGATGGAGTCCAGTCATGTGAAGATATTGACGAGTGTGAAGAGAAATCAGCTTGTCAATGCCCAGGTTGCAAATGCAAAAACACCTGGGGAAGTTATGAGTGCAAATGCAGTGGTGGTTTGTTCTACTCACGAGAAAATGACACCTGTTTAGGTGCATATACTTCTTCAGCAGTGAGTGTCTGGATGATTTTCCTCGTATTGGTTGTTGCTGTTTCCGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCGGAGATTCGGGCAATTATGGCCCAATACATGCCTTTGGATAATCAACCTGAGGTCTCAAATCAAGTTCATCACAATATCTAA 1869 0.4334 MGTKLSLLWCVWVFSLLGCCWGRFVVEKNSLKVTTPKSLKGAYECAIGNFGVPKYGGTLVGSVMYPKVNQKGCTNFSDVGVSFQSKPGGFPTFLLVDRGDCFFTLKAWNAQNGGAAAILVADDKAETLITMDIPEEGKDAKEDYLEKISIPSALISKTLGDSIKQALSDGEMVNINLDWREALPHPDDRVEYELWTNSNDQCGPKCDGLINFQKDFKGVAQLLEKKGFTQFTPRYITWFCPEAFILSKQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANETGKPWKWWDYVTDFSIRCPMRENKYTEECSDQVIKSLDVDLKKIKDCVGDPHADVENPVLKAEQAAQIGKGSRGDVTILPTLVINDRQYRGKLSRPAVLKAICAGFQETTEPSICLTPELETNECLENNGGCWKDKTSNITACRDTFRGRVCECPIVQNVKFFGDGYTHCEASGTLSCDFHNGGCWKGEQGGRAYSACLDDYRKGCTCPPGFRGDGVQSCEDIDECEEKSACQCPGCKCKNTWGSYECKCSGGLFYSRENDTCLGAYTSSAVSVWMIFLVLVVAVSGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEVSNQVHHNI 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01761 622 ProSitePatterns Calcium-binding EGF-like domain signature. 516 542 IPR018097 GO:0005509
Cca07g01761 622 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cca07g01761 622 SMART egfca_6 516 558 IPR001881 GO:0005509
Cca07g01761 622 Pfam Complement Clr-like EGF-like 500 519 IPR026823 -
Cca07g01761 622 Gene3D Laminin 410 454 - -
Cca07g01761 622 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 601 - -
Cca07g01761 622 CDD EGF_CA 516 547 - -
Cca07g01761 622 Gene3D Laminin 462 558 - -
Cca07g01761 622 SUPERFAMILY PA domain 93 170 IPR046450 -
Cca07g01761 622 Gene3D - 21 186 - -
Cca07g01761 622 Pfam PA domain 62 163 IPR003137 -
Cca07g01761 622 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 11 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01761 Cca-Chr7 43912848 43918407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01761 3 619 Miscellaneous Gene Families AT2G30290 67.685 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01761 - - gmx:100807514 1195.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01761 07 43912848 43918407 Cca07g01761 07 43912848 43918407 ECH
Cca07g01761 07 43912848 43918407 Cca01g01653 01 38209354 38214578 PCT