Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01653 ATGACAATGAGGACAAAGCAAATTTTTTTTTGGTGTGCATGGGTTTTTCTTTGGGGGTCTTGTGTGGCCAGATTTGTGGTGGAAAAGAACAATTTGAAAATCACTTCTCCGAAATCATTGAGAGGTATATATGAATGTGCAATTGGAAATTTTGGGGTTCCCAAGTATGGAGGAACCATGATTGGCTCTGTGTTGTACCCCAAGTCCAATCGGAATGGATGTAAAAGCTTTGATTCCTCGTTGGGTTCCAAGCCAGGAACATTCCCTACCTTTGTTCTAATTGATCGGGGAGATTGCTTCTTCACTTTAAAGGCGTGGAATGCACAAAAAGGTGGAGCAGCAGCTATTCTTGTTGCAGATGATAGGGTAGAACCATTGATCACCATGGATACTCCTGAAGAAGGGAATGGTGCAAATAATGATGATTACATCGAGAAGATCAGCATTCCTTCTGCCCTTATCAGCAAATCACTAGGGGATAACATCAAGAGGGCTCTCTCTGATGGGGCCATGGTTAACGTAAATCTTGATTGGAGAGAGGCTCTTCCACACCCTGATGAGAGAGTTGAGTATGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAAAGTGAAATTAATTTTGTCCAGAGTTTCAAAGGGTCAGCTCAATTACTTGAGCAGAAAGGGTTTGCAAAGTTCACCCCTCACTATATAACTTGGTATTGTCCAGAAGCATTTATATTAAGCCAACAGTGCAAGTCCCAGTGCATAAATAATGGGAGATACTGTGCTCCAGATCCTGAGCTAGATTTCAGCAGAGGGTACAATGGTAGAGATGTTGTTATCCAAAATTTACGTCAAGCATGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAACCTTGGCAATGGTGGGACTATGTCACTGACTTTTCGATCCGCTGTCCAATGAGAGAGAATAAGTACACTGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATTTGAAAAAAGTTAAAGACTGTGTTGGAGATCCTACGGCAAATGTCGACAACCCTGTTCTTAATGCTGAGCAGGATGCACAGATTGGCAACGGCGATCGTGGTGATGTTACTATACTACCTACTCTTATTATAAACAACAGACAATACAGAGGTAAGCTGTCAAGAGCAGCAGTACTCAAGGCAATCTGTTCAGGTTTCCAAGAGACCACTGAGCCATCAATTTGTTTAGCCCCAGACATGGAAACAAATGAGTGTTTGCAAAACAATGGTGGTTGTTGGCAGGACAAAGCTGCTAACATTACTGCATGCAGGGACACTTTCAGAGGAAGAGTATGTGAATGCCCTACTGTACAAAATGTACCATTTATTGGTGATGGATATACTCATTGTGAAGCTACAGGCTCCTTGAGGTGTGCAATCAACAATGGAGGTTGTTGGAAGGAAACCCAAGGTAGCAGGTCTTTCTCTGCTTGTATTGATGACCACACCAAAGGTTGCAAGTGTCCACCTGGATTCAGGGGTGATGGATTCCACTCCTGTAAAGATGTGGATGAGTGCAAAGAAAAAACGGCTTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCACATGCAATGATGGTTTGTTCTACACGCGAGAAAATGACATGTGTATTGGTAAATATGCTGCGACAGCGTCTGGTGGGGGTATTGTTTGGTTGGTTATTCTGATCTTGGCTATTGCTGGTGCTGGGGGATATGCATTTTACAAGTACAGAATCCGGAAATATATGGACTCCGAGATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATCAACCGGAGGTTTCTAGTCAAGCTCATGAAGATGTCTAG 1875 0.4283 MTMRTKQIFFWCAWVFLWGSCVARFVVEKNNLKITSPKSLRGIYECAIGNFGVPKYGGTMIGSVLYPKSNRNGCKSFDSSLGSKPGTFPTFVLIDRGDCFFTLKAWNAQKGGAAAILVADDRVEPLITMDTPEEGNGANNDDYIEKISIPSALISKSLGDNIKRALSDGAMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCESEINFVQSFKGSAQLLEQKGFAKFTPHYITWYCPEAFILSQQCKSQCINNGRYCAPDPELDFSRGYNGRDVVIQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMRENKYTEECSDQVIKSLGADLKKVKDCVGDPTANVDNPVLNAEQDAQIGNGDRGDVTILPTLIINNRQYRGKLSRAAVLKAICSGFQETTEPSICLAPDMETNECLQNNGGCWQDKAANITACRDTFRGRVCECPTVQNVPFIGDGYTHCEATGSLRCAINNGGCWKETQGSRSFSACIDDHTKGCKCPPGFRGDGFHSCKDVDECKEKTACQCPECQCKNTWGSYECTCNDGLFYTRENDMCIGKYAATASGGGIVWLVILILAIAGAGGYAFYKYRIRKYMDSEIRAIMAQYMPLDNQPEVSSQAHEDV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01653 624 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 603 - -
Cca01g01653 624 Gene3D Glutaredoxin 238 398 - -
Cca01g01653 624 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Cca01g01653 624 Gene3D Laminin 470 557 - -
Cca01g01653 624 Gene3D - 22 185 - -
Cca01g01653 624 Pfam PA domain 62 162 IPR003137 -
Cca01g01653 624 SMART egfca_6 515 557 IPR001881 GO:0005509
Cca01g01653 624 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 11 603 - -
Cca01g01653 624 SUPERFAMILY PA domain 91 172 IPR046450 -
Cca01g01653 624 CDD EGF_CA 515 546 - -
Cca01g01653 624 Gene3D Laminin 409 453 - -
Cca01g01653 624 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01653 Cca-Chr1 38209354 38214578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01653 9 624 Miscellaneous Gene Families AT3G52850 68.599 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01653 - - gmx:100815266 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01761 07 43912848 43918407 Cca01g01653 01 38209354 38214578 PCT