Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01739 ATGTGCACTGGTGCTGAATCTCGAGGAATTGTGAATGGTGACCCCGTGACTAATTCAAAGGTTGGAATGAGAATCAGAGAAGATGGTGAAGGAACCAGAAACTGTGACTGTGGCAGATTCGTTGAAAATCTTCATCAACAATTACATCACCTCCTCAAAACCCTTTTCCCTACCCTTTCGCTTTCTGAGGTGAAAGAAGAGTTGAAATCACTAGCCAAGATTTCAGGTCCAATAATGATGACCAACGTGCTTCTGTACTCTCGATCTGCCATCTCCATGATTTTCTTGGGTCGCCAAGGCGAAGTGGAGCTAGCAGGAGGATCCCTTGCAATAGGGTTTGCCAACATCACTGCCAATTCCTTCCTCAAGGGTCTCACCATGGGAATGGACCCAATTTGTTGCCAAGCATATGGTGCAAAAAGATGGTCAGTTCTCAGCCAAACCTTCTGCAAAACCTTGTGCCTCCTCCTCCTAGTTGCCATCCCCATTTCATTTCTATGGCTAAACATGTCACCCCTCCTTCAGTGGCTAGGCCAAGACCCTGAAGTCACAAAGGTTGCACAAGTTTACATGGTTTTCTCTATCCCAGAATTGCTTGCACAAGTTCACCTCAACCCCTTGAGATCTTTTTTAAGGACACAAGGCCTAACTGCCCCTCTAACTGTGGCTGCATCTTTTGCTGCCATCTTACACCTCCCCATCAACTACTTCTTTGCATCATATTTGAAGCTAGGAGTCAAGGGCATTGCACTAGCCACAGGCTTGAACACCATAAACATGATCCTAGGCTTGGTGCTCTATCTTGTTCTCTCAAAGAAGCCACTAAAACCTTGGGAAGGGGCCACAATTGTTTCTGCTTTTCATGATTGGAGACCACTACTAAGCCTAGCATTGCCTAGTTGCGTCTCAGTGTGCTTGGAGTGGTGGTGCTACGAGATAATGCTCTTCCTATGTGGCCTTTTGAGTAATCCACAAACCACAGTTGCAACCATGGGTGTGCTTATTCAAACAACCGGGTTCCTATATGTGTTCCCGTTTTCATTAAGTGCTGCATTGACAACACAAATTGGTCACTCACTTGGGGCAGGCCAACCCTTACGTGCTCAAAGCATAGCCACGGTTGGACTCTTCATTGCATTTGCTTTAGGGGTCTCAGCCTTTGTTTTCTTGATGTTTGTGAGGAATGTGTGGGGTAAACTCTTCACAAGTGAGGCACAAATTGTTGACATGGTCACCACCATTCTTCCAATTCTGGGGCTGTGTGAGATTGGTAACTGGCCTCAAACTGCAGCGTGCGGGATCCTATCTGGGACTGCACGACCTTATGTGGGTGCAAGGATCAACTTGTGTGCGTTTTACTTGATTGGTTTACCCGTGGCAGTTTTTGCTGCTTTCATGCACAGATATCAGTTGAGGGGTTTGTGGTTTGGAATGTTGGCAGCGCAAGTTTCGTGCTTTTGTATGATGGTTTACGCATTGATTCAAACAGATTGGGGGCATCAGAGTAAAAGAGCTGAGCAATTGGCTCAAGTAACACATGATGAGGAATCTGGGCTCCTTAATTCTGATTTGTGA 1575 0.461 MCTGAESRGIVNGDPVTNSKVGMRIREDGEGTRNCDCGRFVENLHQQLHHLLKTLFPTLSLSEVKEELKSLAKISGPIMMTNVLLYSRSAISMIFLGRQGEVELAGGSLAIGFANITANSFLKGLTMGMDPICCQAYGAKRWSVLSQTFCKTLCLLLLVAIPISFLWLNMSPLLQWLGQDPEVTKVAQVYMVFSIPELLAQVHLNPLRSFLRTQGLTAPLTVAASFAAILHLPINYFFASYLKLGVKGIALATGLNTINMILGLVLYLVLSKKPLKPWEGATIVSAFHDWRPLLSLALPSCVSVCLEWWCYEIMLFLCGLLSNPQTTVATMGVLIQTTGFLYVFPFSLSAALTTQIGHSLGAGQPLRAQSIATVGLFIAFALGVSAFVFLMFVRNVWGKLFTSEAQIVDMVTTILPILGLCEIGNWPQTAACGILSGTARPYVGARINLCAFYLIGLPVAVFAAFMHRYQLRGLWFGMLAAQVSCFCMMVYALIQTDWGHQSKRAEQLAQVTHDEESGLLNSDL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01739 524 TIGRFAM matE: MATE efflux family protein 77 475 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g01739 524 Pfam MatE 77 237 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g01739 524 Pfam MatE 299 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g01739 524 PANTHER MULTIDRUG RESISTANCE PROTEIN 51 514 - -
Cca07g01739 524 CDD MATE_eukaryotic 67 504 IPR045069 GO:0042910|GO:1990961
Cca07g01739 524 PANTHER PROTEIN DETOXIFICATION 53 51 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01739 Cca-Chr7 43620077 43626572 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01739 K03327 - gmx:100816717 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01739 07 43620077 43626572 Cca07g01739 07 43620077 43626572 ECH
Cca07g01739 07 43620077 43626572 Cca01g02010 01 46979361 46988342 PCT